Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20890 280 / 7e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G66010 214 / 2e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G18810 41 / 0.0003 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT5G41690 42 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009942 [exp] 467 / 2e-168 AT3G20890 313 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009943 [exp] 405 / 1e-144 AT3G20890 328 / 9e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030139 [exp] 390 / 1e-138 AT3G20890 315 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258000 [exp] 367 / 1e-129 AT3G20890 357 / 6e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G053200 [exp] 365 / 4e-129 AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G101200 [exp] 237 / 3e-78 AT5G66010 344 / 2e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030140 pacid=23172635 polypeptide=Lus10030140 locus=Lus10030140.g ID=Lus10030140.BGIv1.0 annot-version=v1.0 ATGTTTCTCAGAGGATATCTCGATGGTGCTGATCTACGTGAAGGTGCAAAACGTCAGCGGATCGTTGATCAGGCACCCTCATTCTTTGGGGCCACCCCAG GGACAAGCTTTATATACAATCAACCAACTTATGCTTACGTCGGCCAGCCTCCATCTTTTCCCGGTGTGCGACTCCGTGGCCTGCCCTTCGACTGTACAGA TGCTGACGTGGCAGAATTCTTCCAGGGCCTAAACATAGTCGACGTCCTCTTCGTCCACAAGGGCGGCAAGTTCAGCGGAGAAGCATTCTGTGTGCTAGCC TACCCTCTTCAAGTCGATTTTGCGCTTCAAAAGAACAGGCAAAACATGGGGAGGAGATACGTCGAGGTGTTCAGAACCACAAGGCAAGACTATTACATGG CGGTAGCAGGCCAAGTGTCCGAAAATCGCGGTGGCAGTTCGCCGAGGCAGAGGTTTCCACGAGCGAAGCCGTACGAATCCGCGGAGCACACGGGGGTGTT GCGGTTGAGGGGGCTGCCGTTTTCGGCAGGGAAGGATGAGATAGTGGAGTTTTTCGAAGACTATGCGGCGTTGTCGGAAAATTCGGTCCATATAGTTATG AATTTCGAAGGGAGACCGACGGGGGATGCGTTTGTGGAGTTTGCCAGTGCGGAAGATTCGAAGGCAGCAATGGGGAAACATAGGAAGACATTGGGTAGTC GTTATATAGAGTTGTTTCCTTCGTCGGCAGAGGAATTAAGTGAAGCTTTGTCCAGAGGACGCTAA
AA sequence Show only first row Show all	>Lus10030140 pacid=23172635 polypeptide=Lus10030140 locus=Lus10030140.g ID=Lus10030140.BGIv1.0 annot-version=v1.0 MFLRGYLDGADLREGAKRQRIVDQAPSFFGATPGTSFIYNQPTYAYVGQPPSFPGVRLRGLPFDCTDADVAEFFQGLNIVDVLFVHKGGKFSGEAFCVLA YPLQVDFALQKNRQNMGRRYVEVFRTTRQDYYMAVAGQVSENRGGSSPRQRFPRAKPYESAEHTGVLRLRGLPFSAGKDEIVEFFEDYAALSENSVHIVM NFEGRPTGDAFVEFASAEDSKAAMGKHRKTLGSRYIELFPSSAEELSEALSRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	0	1
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	4.0	0.7896
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	4.6	0.7689
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	6.3	0.7773
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	6.7	0.7661
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	13.4	0.7615
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10008872 [exp]	14.4	0.6935
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	16.9	0.7324
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	17.9	0.7579
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	22.0	0.7457
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002251 [exp]	22.0	0.6784

Compare expression of checked genes

Lus10030140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.