Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19855 214 / 1e-70 AtRbcX2 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) AT4G04330 47 / 2e-06 AtRbcX1 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009941 [exp] 385 / 5e-138 AT5G19855 221 / 1e-73 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10027363 [exp] 250 / 6e-85 AT5G19855 200 / 1e-65 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10002563 [exp] 249 / 1e-84 AT5G19855 202 / 1e-66 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258100 [exp] 256 / 7e-87 AT5G19855 259 / 2e-88 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Potri.009G053300 [exp] 248 / 4e-84 AT5G19855 230 / 4e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [flax] [poplar] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Lus10030141 pacid=23172550 polypeptide=Lus10030141 locus=Lus10030141.g ID=Lus10030141.BGIv1.0 annot-version=v1.0 ATGGTGGGAGGAGCAGCTGCAGCTTGGGCTATGGTGGGCTCGTCCGTGGTGGATTATTCCCACACCACCTCCTCATGTTCCCTCCCTGAATTGGCGATGC ATAGGAATATTTATTCTACCAAGAGGAAGCAGTTTGGGAAGTTGGCAACCACAGTCAAAATAAGCAATTCGTTTGCTGTCCCTGGGATTGCCACCAAGAT TACTACTACGAGGAAGAAGAAGCTGCAGAGGAAAGGGCATCGGAGATTCGTCGTCGTCAGCGAGCTCGCTGGCCAGTACGAGGATAGCTTCGAGGACGTT AAAACTCAAATACTCAACTATTTCACGTATAAGGCTGTCAGGACGGTCATGAACCAGCTCTACGAGATGAACCCAACTCACTACCGGTGGTTTTACGACT TTGTTGCCACAAATAAGCCTGGAAGTGGGAAGCATTTCATCCGTAACTTAGCCAAGGAGAGACAGGACCTAGCTGAAAGAGTAATGGTGACAAGGCTTCA CCTCTATGGAAAATGGATTAAGAAATGCGACCATGCAGAGATGTACAAAGAGATTTCAGATGAGAACTTGGCGTTGATGCGTGAACGGCTTATGGAGACA GTGATATGGCCATCGGACGACTCCAACACTGAGAAGATTGGCTGA
AA sequence Show only first row Show all	>Lus10030141 pacid=23172550 polypeptide=Lus10030141 locus=Lus10030141.g ID=Lus10030141.BGIv1.0 annot-version=v1.0 MVGGAAAAWAMVGSSVVDYSHTTSSCSLPELAMHRNIYSTKRKQFGKLATTVKISNSFAVPGIATKITTTRKKKLQRKGHRRFVVVSELAGQYEDSFEDV KTQILNYFTYKAVRTVMNQLYEMNPTHYRWFYDFVATNKPGSGKHFIRNLAKERQDLAERVMVTRLHLYGKWIKKCDHAEMYKEISDENLALMRERLMET VIWPSDDSNTEKIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	0	1
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	1.0	0.9646
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	2.4	0.9459
					Lus10017606 [exp]	2.6	0.9258
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	2.8	0.9469
AT3G52740			unknown protein		Lus10017046 [exp]	3.5	0.9451
AT5G55570			unknown protein		Lus10008950 [exp]	3.9	0.9431
AT1G60420			DC1 domain-containing protein ...		Lus10017252 [exp]	4.7	0.8956
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	4.9	0.9256
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	5.2	0.9241
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	6.5	0.9351

Compare expression of checked genes

Lus10030141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.