Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79280 1407 / 0 AtTPR, NUA TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009940 [exp] 2825 / 0 AT1G79280 1528 / 0.0 TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080900 [exp] 1686 / 0 AT1G79280 1751 / 0.0 TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07926 [flax] [poplar] TPR_MLP1_2 TPR/MLP1/MLP2-like protein
Representative CDS sequence Show only first row Show all	>Lus10030142 pacid=23172613 polypeptide=Lus10030142 locus=Lus10030142.g ID=Lus10030142.BGIv1.0 annot-version=v1.0 ATGCCCATCTTCATCACCGACGACGACCTTGTTCGTCACACCAACGATGCACCGTACGTCGCTGCTAGGGCTGACGAGTACATCCGACGCTTGCAGACGG AGTTTGATACCGTCAAGGCTGCCGCAGATGCCAACGGCGTCACCGCTGAGCAGACTTGTTCGCTTCTCGAACACAAGTTTTTGTCTCTGTCCGCCGAGTT CTCTACGCTGCAGTCCCAGAACGCACAGCTTCAGTCCTCGTTCGATGAGCGACTCTCGGAACTCGCCGACGTCCAGACTCAGAAGCACCAGCTTCACTTG CAATCGATGGAAAAGGATGGTGAAATAGAGAGGCTGACAACGGCGCTTTCAGAGCTGCGTAAAACTAACAGGCAGTTGATGGAGTTGGTGGAACAAAAAG ATGCGGAAATCAGCGATAAGAAAGTTACTATTAACAGCTATCTCGATAAGATTGTTAATTTGACGGAGAGTGCATCAAAAAAGGAAGCCCGTTTAAGTGA AGTTGAAGCAGAGTTGTTGCGATCTCAGGCCCTCTGTTCTCGCCTTACACAGGCTGAGAAACAACTGAGTGAATGCTCAACCTCTGCCAAGAGAAAAATG GAGAGGGTGGAGGAGCTCGAAGCGAAGTTAACCTCCTTGCAAGAGGAATTATGCTCTACCAAGGATAGTGCTTTAGCAAATGAAGAGCAGTTTTCGGCTG AACTGACTACTGCTAATAAACTAATTGAGCTCTATAAGCAAAGTTCTGAGGAATGGTCTCAAAAAGCTGGAGAGCTTGAAGGTGTGATTAGAGCTTTAGA GCAATACTTGAGTGAGCTTGATACTGATTACAAAGCAAGACTTGAAAAAGAAATACTTTCGAGAAGAGAATTAGAGAAGGAAGCTGCTGATCTCAGAGGT AAACTTGAACAATGTGAAGCTGAGCTGGAAAGCAACAGAAAAAATAATGAGCTCAATCTACTTCCACTCAGTAGTTTTTCAACAGAAAGGTGGACGTCAC AGTCTGATGGTAATGATACTATGGAAGGTACTGACATGCTCATCCCCAAGATACCTCCTGGTGTTTCTGGGACTGCATTAGCAGCTTCTTTACTTCGTGA TGGATGGAGTTTGGTCAAAATGTATGCGAAGTATCAAGAAGCGAATGATGCTTTTCTTCATGAACAACTAGGAAGGAAGGAATCAGAAGCTGTGTTGCAG CGGGTCCTGTTTGAACTGGAGGAGAAAGCGGGAGTCATTTTGGAAGAAAGAGCGGATTATGAGAGAATGGTCGAATCATACTCTATCATGGAGCAAAGGC TGCAACAATTACTGTCTGAACAGGGCAATCTGGAGAGAATGATCCAACAGTCAAAGGCTGAAGTAAGGAGGCATGAGCGACAGTATGATTATGCTCAGAA GGATATTGTTGATCTCCAGAAGCAGATTACAATACTTCTAAAGGAATGTCGTGATGTGCAACTACGATGTGGATTGGGGGATAATGCAGATGATGATTTC CCGGTACATGGTGCTGCTGGTATGGAATCAGACACTGTTGAGGATAATGTTCTTTCTGAAAGGCTTTTGACTTTCAAGGACATAAATGGATTAGTTGAGC AGAATGTGCAACTGAGGAGTCTCGTGCGAAGTCTTTCAGATCAGATTGAGAATAATGAGGAGGAGTTCAAGGTGAAATTGGAAATGGAACTAAAAAAACA AACTGATGAAGCTGCTTCTAGAGTTGCTATAGTCTTACAAAGGGCAGAAGAACAAGGGCAGATGATTGAATCTCTTCATACAGCTGTTGCTATGTATAAA AGGTTATATGAGGAAGAACATAAACGTTATTCGCCGAATTCTTGTCCGCATTCATTGCAGGAAGCTTCAGAGGATGCGAGGGGGGATCTTTTGGTTCTAC TTGAGGGCACTCAGGAAGCTAGCAAGAAGGCCCAGGAAAAGGTTGCCGAGCAGCTGGGATTGCTTGAGGAAAAGCTATCAAAATCTAGGAGTGAAATTGT GTCGCTGCAATTGGAGCGTGACAAGTTGGCTTCAGAGGCAAAACATGCGGTAGAAAAACTTGCGAGATTTATGAAAGAATTTGAACATCAGAACACTCAG ATCCACTGTCTTCAAGATGGAAATTTGGAGTACTCGCGCGTGATTCTTGACTTTCAGAAGAGGTTAAATGAAAGTATGCATGCTCAAAATGCTTCCGAGG ATCATTGTCGGAGGTTGAACATGGAGGTGTCGACCCTAAAGCACGAGAAGGAAATGTTATCAAATGCTGAAAAGAGAGCATGTGATGAAGTTGGTAGATT GTCAGAGAGGGTGCACAGGCTGCAGTCTAGCTTAGACACTTTGCAGAGTGCTGAGGAGGTTCGGGAGGAAGCAAGGGCTGCCGAGAGGAGAAAACAGGAG GAACATGTTCAAAATATTGAGAGGGAATGGGTGTTAGCGAAAAAAGAGCTCGAACTGGAGAAGGACAATGTCAGGGCCCTCACATGTGGTCGTGAGCAGA TTTTGAAGGATGCAATGAAACAAGTGGGTGAGATTGGAAAAGAGTTAGCTAATGCGTTAGGTGCGGTAACAGTCGCTGAGACCAGGGCTGCTGTTGCTGA GACTAAAGTTGAGGATTTGGAAAAGAAGCTCAGGATTCCAGATCAAAAGGCCGCCACCGATTTGATTATGCTGAAGCAGGAGTTAGAAAAGTCGAGACAA GAGGCACAAACTAATAAGGACTACATGGTGCAGTATAAGAATATAGCTGAGGTAAATGAAGATGCACTGAAGCAAATAGAAGCTGCTCATGAGAACTTCA AGATAGAGTCAGAAAAGCGCAAAGAGTCTTTGGGAGCTGAGTTGATTGCACTAAGAGGGAAGATATCTGAACTTGAAAATGAATTGCGTTTGAAGTCTGA GGAAGTAGTTGCTCTTGCTGCTGGTAATGGGGAAACTGTTACCTCTGCTCTGGCTGAAGTTACTGCCTTGAAGGAGGAAGCTTCAAATAAACTGTCTCAA ACTGCTGCATTGGAAATGCAAGTTTCGGTATTGAAAGAGGATCTGGAGAAGGAGCATGACCGATGGAGATCTGCTCAAAATAATTACGAGAGACAGGTCA TTTTACAATCTGAGACAATTCAGGAGTTAACTAGGACATCGCAGACTTTGGCATCATTACAAGAAGAAGCAACTACCTTGCGTAAATTAGCCGATGAGCG AGAACGGGGAAATATTGAGTTGAAAGCCAAGTGGGAGGCTGCACAATCAATGCTAGATGAATCAAGGAGGGAATCTCAGAAGAAATATGACGAGCTCAAT GAACAGAATAAAGTACTGCACGACAGATTGGAGGCTCTGCACATCAAGTTTGCTGAGACTCACCGCAGCTCTGCTGGAGTGTCTTCTAGAAACGGTGTTG ATTCAAGCGATGATGGAGGATTGCAGAAAGTTGTTGGCTATCTTCGACGATCCAAGGAGATGGCAGAGACAGAGATGGCTTTATTAAAGCAGGAAAATTC TCGATTGAAATCACAACTTGATAATGCTCTCAAGGCAGCTGAAAATGCTAAAGTTTCACTTGGTGCTGAGCGTGCAAACACGAGGGCATTAATTTTTTCA GAGGAAGAAATGCAATCTCTTCAGAATCAGGTTATGGAGATGAACTTGTTACGTGGGAACAATATGCAACTTATAGAAGAGAACAAGCAGAATGTTGAGG AATGTCAGAAATTGCGTGATTTAGCACAGGAGAGTGATGCCAAGGCTGAACATCTGAAACGTCTACTGAGTGAGAAAGAAAAGGAAATCGATGCTTGCAA GAAAGAATTAGAAATGTTAAGGGCGGATAAGGTTTTCTTGGAAAATAACATATCTGAGAAGAATAATGAGTTGGAGGAGGTCAAGAACTGCATGTTAAAG CAGCAAGAGACCCTGTCGAAGATGGAGCATGATCTTGGGAGAAGTGAAGTGGAGCGGAAACAAAGAAGTAATGATCTTCTGGAAGCAGAGGCTAACATAA AGAGTGAATTGGAAAAGCAGAAGAGGCAATTCACTTTTAACAAGAAAAAATTAGACAATTTAACAAAGCAAAGGGATGAGTTAATCAAAGAAAAGAATGC AGCTAACAAACAGATTGAAGAATTAAAACAAGCAAAGAAGGCCATTGGCAATGTTGGTGGTGAGCACTCCCATAAGGAAAAGGAAAAGGAAGACAAAACA AGATTACAGATACTGGAGAAAACAGTGGAGAAGCGAAGAGAGGAGTTGAAGAAAGCAAAAGATGAGTTGAGGAAGGAAAAGGAGGATCATCAAATGGAGA AATTGAGGTTTGCGGACATATATGATAAAAGTAAGGAGCCCCTGAGGCGCGTTTTGGATGCACTAGAAAAGCTTAAGCACGTTGAGGATGCTCTCCCTGA GTTTCTTTCTGGAAGCGTTTTGGATGATCTCATTGCTGTTTGCACATCAGCCATTGAGATTTTTGGGAAAGAAGTGAATTCGTTGCTGGGTGACCTTGGG CAAAGCACACCCTCAGTAGAGACTCCATCTCTGGATGCTCCTGCACCAGTTTCAGCTAGTGAAACAACTTCTCAAATTCCTCTCATCCCAGCTGCTTCTG CCGCTCAAGCTGCTGGAAAAGCTGCTGAAGAGAGGGACAAAAGATCCTCAGCTCCGCAGTTAAATGCCTCCGAAGGTCGTAAAACAGCAAGAAGGTTGGT GAGGCCCAGTTTTTCCAAGACAGAGGAACCTCAGGGTGATGCAGAGATATCCGAGGCAGATGGATCCAGCGTCGAGGGGAAACNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATTGGAGTCCGATGGTGACCGAGAAGAGG GAGAGATGCTACCAGACGTGTCGGAAGTGGAAGTGTCCAATACGGCAGAGAGCCCCGAAAGTGGCGAGTTTGTACCCGAGACAACACCCGAGGGGTCGCC ATTGA
AA sequence Show only first row Show all	>Lus10030142 pacid=23172613 polypeptide=Lus10030142 locus=Lus10030142.g ID=Lus10030142.BGIv1.0 annot-version=v1.0 MPIFITDDDLVRHTNDAPYVAARADEYIRRLQTEFDTVKAAADANGVTAEQTCSLLEHKFLSLSAEFSTLQSQNAQLQSSFDERLSELADVQTQKHQLHL QSMEKDGEIERLTTALSELRKTNRQLMELVEQKDAEISDKKVTINSYLDKIVNLTESASKKEARLSEVEAELLRSQALCSRLTQAEKQLSECSTSAKRKM ERVEELEAKLTSLQEELCSTKDSALANEEQFSAELTTANKLIELYKQSSEEWSQKAGELEGVIRALEQYLSELDTDYKARLEKEILSRRELEKEAADLRG KLEQCEAELESNRKNNELNLLPLSSFSTERWTSQSDGNDTMEGTDMLIPKIPPGVSGTALAASLLRDGWSLVKMYAKYQEANDAFLHEQLGRKESEAVLQ RVLFELEEKAGVILEERADYERMVESYSIMEQRLQQLLSEQGNLERMIQQSKAEVRRHERQYDYAQKDIVDLQKQITILLKECRDVQLRCGLGDNADDDF PVHGAAGMESDTVEDNVLSERLLTFKDINGLVEQNVQLRSLVRSLSDQIENNEEEFKVKLEMELKKQTDEAASRVAIVLQRAEEQGQMIESLHTAVAMYK RLYEEEHKRYSPNSCPHSLQEASEDARGDLLVLLEGTQEASKKAQEKVAEQLGLLEEKLSKSRSEIVSLQLERDKLASEAKHAVEKLARFMKEFEHQNTQ IHCLQDGNLEYSRVILDFQKRLNESMHAQNASEDHCRRLNMEVSTLKHEKEMLSNAEKRACDEVGRLSERVHRLQSSLDTLQSAEEVREEARAAERRKQE EHVQNIEREWVLAKKELELEKDNVRALTCGREQILKDAMKQVGEIGKELANALGAVTVAETRAAVAETKVEDLEKKLRIPDQKAATDLIMLKQELEKSRQ EAQTNKDYMVQYKNIAEVNEDALKQIEAAHENFKIESEKRKESLGAELIALRGKISELENELRLKSEEVVALAAGNGETVTSALAEVTALKEEASNKLSQ TAALEMQVSVLKEDLEKEHDRWRSAQNNYERQVILQSETIQELTRTSQTLASLQEEATTLRKLADERERGNIELKAKWEAAQSMLDESRRESQKKYDELN EQNKVLHDRLEALHIKFAETHRSSAGVSSRNGVDSSDDGGLQKVVGYLRRSKEMAETEMALLKQENSRLKSQLDNALKAAENAKVSLGAERANTRALIFS EEEMQSLQNQVMEMNLLRGNNMQLIEENKQNVEECQKLRDLAQESDAKAEHLKRLLSEKEKEIDACKKELEMLRADKVFLENNISEKNNELEEVKNCMLK QQETLSKMEHDLGRSEVERKQRSNDLLEAEANIKSELEKQKRQFTFNKKKLDNLTKQRDELIKEKNAANKQIEELKQAKKAIGNVGGEHSHKEKEKEDKT RLQILEKTVEKRREELKKAKDELRKEKEDHQMEKLRFADIYDKSKEPLRRVLDALEKLKHVEDALPEFLSGSVLDDLIAVCTSAIEIFGKEVNSLLGDLG QSTPSVETPSLDAPAPVSASETTSQIPLIPAASAAQAAGKAAEERDKRSSAPQLNASEGRKTARRLVRPSFSKTEEPQGDAEISEADGSSVEGKXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWSPMVTEKR ERCYQTCRKWKCPIRQRAPKVASLYPRQHPRGRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	0	1
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	1.0	0.9455
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	3.5	0.8927
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	3.9	0.9134
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	4.0	0.9206
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	5.5	0.9170
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	7.2	0.8917
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	8.7	0.8891
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	8.9	0.8987
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	9.9	0.9028
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	10.2	0.8834

Compare expression of checked genes

Lus10030142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.