Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79580 253 / 8e-82 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT2G46770 219 / 9e-69 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G32770 216 / 1e-67 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT4G10350 215 / 2e-67 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT3G61910 211 / 7e-66 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT1G33280 210 / 8e-66 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT4G36160 201 / 1e-61 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 201 / 2e-61 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT3G24503 202 / 2e-60 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT5G66300 193 / 2e-59 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009939 [exp] 285 / 5e-96 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10019387 [exp] 264 / 2e-82 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10033239 [exp] 229 / 7e-72 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10008271 [exp] 221 / 1e-71 AT1G32770 277 / 8e-94 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10002687 [exp] 228 / 3e-71 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030205 [exp] 227 / 7e-71 AT2G46770 357 / 5e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10023626 [exp] 227 / 1e-69 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10017340 [exp] 222 / 2e-69 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10001664 [exp] 222 / 3e-69 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176600 [exp] 278 / 4e-92 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.008G080000 [exp] 272 / 7e-90 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.014G104800 [exp] 231 / 3e-73 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G178700 [exp] 230 / 1e-72 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G153300 [exp] 226 / 9e-71 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G448400 [exp] 225 / 2e-70 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Potri.018G075000 [exp] 217 / 2e-66 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.013G092400 [exp] 209 / 5e-65 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.019G066000 [exp] 209 / 1e-64 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.007G014400 [exp] 209 / 1e-64 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family CL0099 [flax] [poplar] PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10030143 pacid=23172547 polypeptide=Lus10030143 locus=Lus10030143.g ID=Lus10030143.BGIv1.0 annot-version=v1.0 ATGGATGAAGTTTTGATCCAACACGATGAGTTAAAATGTGATCGCATTGCGCTTTGGACGTTGATTGCTGATACATGGTTAGATACAAAGGAAGGAATAT ACGATGAATTCGTCGGCAAGTTGGCTGTGAAAGCCAAAGACTGGGTCGTTGGTGATCCTTTCCACCCGGCTTCTCGTCTTGGTCCACAGGTCGATAAGAA ACAGTACGAGAAGATACTGCACATTGAGCAAGGAAAGAAAGAAGGAGATACCTTATTAACCAGCGGTAAAGCTGCTGCCAATAAGGGATATTACATCCAT CCTACTGTCTTCACCGATGTTACGGATATGACCATAGTGAAAGACGAGATCTTCGGTCCGGTGATGTCACTCATGAAGTTCAAAACGACGGAAGAAGCGA TCAAGTTGGCGAACAATACAAGGTATGGGTTAGCAGTGGGGATAGTGACCAACAATTTGGACATTGCAAACACAATTTCAAGATTGATCAGAGCGGGAGT CATCTGGATTAACTTTACTTTGTGTTCGATTATGATTGCCCTTACGGAGGGTACAAATCTATTGCAGCTCTATATATTGATAAGATTCATGGCGGGGAGT GGGCAGCTGACGGTGCCTCCAGGTTTCAGGTTCCACCCAACGGATGAGGAACTTCTGTACTATTATCTCAGGAAGAAAGTTTCTTATGAGGCTATTGACC TCGACGTTATCCGGGAAGTCGACCTCAACAAGCTCGAGCCTTGGGACCTCAAAGAGAAGTGCAGGATAGGAACAGGGCCTCAAAATGAGTGGTATTTCTT CAGCCACAAGGACAAGAAGTACCCGACTGGGACTCGAACCAACCGAGCAACTACGGCCGGGTTTTGGAAGGCGACGGGGAGGGACAAAGCCATACACCTC GGAAATTCACAGAGGATAGGGATGCGTAAAACTCTCGTGTTCTATACCGGACGTGCACCTCATGGCCATAAAACCGACTGGATTATGCATGAATATCGTC TCGACGACGACAACTCTGACGTTCAGGTACTTCTAAATCATGCGTTGTAA
AA sequence Show only first row Show all	>Lus10030143 pacid=23172547 polypeptide=Lus10030143 locus=Lus10030143.g ID=Lus10030143.BGIv1.0 annot-version=v1.0 MDEVLIQHDELKCDRIALWTLIADTWLDTKEGIYDEFVGKLAVKAKDWVVGDPFHPASRLGPQVDKKQYEKILHIEQGKKEGDTLLTSGKAAANKGYYIH PTVFTDVTDMTIVKDEIFGPVMSLMKFKTTEEAIKLANNTRYGLAVGIVTNNLDIANTISRLIRAGVIWINFTLCSIMIALTEGTNLLQLYILIRFMAGS GQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKEKCRIGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHL GNSQRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDNSDVQVLLNHAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10030143 [exp]	0	1
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	8.5	0.8695
AT5G49960			unknown protein		Lus10035805 [exp]	9.2	0.8889
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	12.4	0.8881
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	12.5	0.8880
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	21.2	0.8702
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	22.5	0.8724
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	23.2	0.8723
AT1G71740			unknown protein		Lus10029742 [exp]	24.3	0.8748
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	26.8	0.8674
AT5G35370			S-locus lectin protein kinase ...		Lus10025617 [exp]	29.9	0.8639

Compare expression of checked genes

Lus10030143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.