Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 353 / 1e-121 Peroxidase superfamily protein (.1) AT5G58400 304 / 3e-102 Peroxidase superfamily protein (.1) AT5G58390 293 / 4e-98 Peroxidase superfamily protein (.1) AT4G36430 291 / 3e-97 Peroxidase superfamily protein (.1) AT2G18150 290 / 2e-96 Peroxidase superfamily protein (.1) AT5G06730 289 / 4e-96 Peroxidase superfamily protein (.1) AT1G14550 286 / 1e-95 Peroxidase superfamily protein (.1) AT5G06720 285 / 1e-94 ATPA2 peroxidase 2 (.1) AT1G14540 281 / 1e-93 Peroxidase superfamily protein (.1) AT5G66390 280 / 7e-93 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009936 [exp] 621 / 0 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10008581 [exp] 424 / 5e-150 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10009935 [exp] 424 / 2e-149 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10006534 [exp] 350 / 3e-120 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10034207 [exp] 342 / 3e-117 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10000346 [exp] 343 / 1e-116 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10025255 [exp] 338 / 9e-116 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10032786 [exp] 328 / 8e-112 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 325 / 1e-110 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156800 [exp] 421 / 1e-148 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 366 / 7e-127 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 355 / 1e-122 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 352 / 2e-121 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 349 / 5e-120 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 346 / 8e-119 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 343 / 5e-118 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 343 / 6e-118 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 319 / 9e-108 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 311 / 2e-105 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10030145 pacid=23172575 polypeptide=Lus10030145 locus=Lus10030145.g ID=Lus10030145.BGIv1.0 annot-version=v1.0 ATGGCAGGTTCCAAAGCTTTCCTCACGCTTGCAGTATCAGCTTTCTTCCTGATCCAATCTATTTCTGCACAACTAACATCAAACTTTTACGAAACTATTT GTCCCGAAGCGTTGCCCACTATAAAAAGGGTAGTGAACAAGGCCATCAGAGATGAACCTCGTATGGGTGCATCACTGCTTCGTCTCCACTTCCATGACTG CTTCGTCAATGGATGCGACGGGTCAATTCTTTTGGACGATACATCAAGCTTTACTGGGGAGAAAACTGCTGCCCCGAACCTGAACTCGGTTAGAGGGTTT GATGTCGTTGACGAAATCAAGTCCGCAGTTGACAAAGCATGCAAAGGCAGCGTCGTCTCTTGCGCCGACATCTTAGCTGTCGCTGCTCGCGATTCGGTCT CTTTTAGGATGTTCGGTCGGTTCGACCCAACCCCAACCAACAAAGTGGCTCCACCACAGATGGAAACATTGGGTGGCCCACAATTCTGGTACCAAGTCCT AGTAGGAAGAAGAGACGCCAAGACAGCCAGCATCTCCGCCGCAAACAACAACCTCCCACCGCCGTTCTATAGCTTCTCACAACTCATCTCCAGCTTCCAA GCCCAAGGCCTCGACCTCACCGACCTAGTCGCGCTCTCCGGAGGCCATACCATCGGGCTAGCTCGCTGCACCACTTTTCGCGCCCACATCTACAACGACA CCAACATCCAACCTAGATTGGCCGCTTCCTTACAGAGGTCCTGCCCTCCTACCGGTGGCGACAACAACCTCAAGCCGCTTGATTCGACTCCGGCCCAGTT CAATACCGACTACTACAGTGATCTTGTCCGGAACAGAGGCCTTCTACACTCCGACCAGGAACTGTTTGGAACTGGGAACAGTGCCAGCGACAAGCTTGTG ATGACCTACAGTAGTAATCCGACGAAGTTCGCGGCGGATTTTGCGACGTCGATGGTCAAGATGGGAAATCTTCAGGTTGTTACTGGGAGTGCTGGAGAGG TCAGGAACAACTGTCGCGTCGTTAATTGA
AA sequence Show only first row Show all	>Lus10030145 pacid=23172575 polypeptide=Lus10030145 locus=Lus10030145.g ID=Lus10030145.BGIv1.0 annot-version=v1.0 MAGSKAFLTLAVSAFFLIQSISAQLTSNFYETICPEALPTIKRVVNKAIRDEPRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTAAPNLNSVRGF DVVDEIKSAVDKACKGSVVSCADILAVAARDSVSFRMFGRFDPTPTNKVAPPQMETLGGPQFWYQVLVGRRDAKTASISAANNNLPPPFYSFSQLISSFQ AQGLDLTDLVALSGGHTIGLARCTTFRAHIYNDTNIQPRLAASLQRSCPPTGGDNNLKPLDSTPAQFNTDYYSDLVRNRGLLHSDQELFGTGNSASDKLV MTYSSNPTKFAADFATSMVKMGNLQVVTGSAGEVRNNCRVVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10030145 [exp]	0	1
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	4.6	0.6784
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	10.2	0.6317
					Lus10022169 [exp]	20.7	0.5916
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016895 [exp]	28.2	0.5813
AT5G55690	MADS		MADS-box transcription factor ...		Lus10019819 [exp]	34.8	0.5634
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	37.8	0.5778
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10011112 [exp]	38.1	0.5798
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10043232 [exp]	42.4	0.5774
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	56.9	0.5690
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	60.9	0.5601

Compare expression of checked genes

Lus10030145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.