Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30330 163 / 9e-53 BLOS1 BLOC subunit 1, GCN5L1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156700 [exp] 176 / 1e-57 AT2G30330 154 / 5e-49 BLOC subunit 1, GCN5L1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06320 [flax] [poplar] GCN5L1 GCN5-like protein 1 (GCN5L1)
Representative CDS sequence Show only first row Show all	>Lus10030147 pacid=23172605 polypeptide=Lus10030147 locus=Lus10030147.g ID=Lus10030147.BGIv1.0 annot-version=v1.0 ATGGAGAGATCCCAGGCTGAGGTCGGAGCTCTTGAAGCGTCGCTTATTCACCTTGTCCAGGATCACCAACAAGCTGCTCTCCACCTGCGAGAGCAAACAG AGAAAGCTAAGAAAGATGCGATTAGGAAAGCGGTGAGAGTGTCAAATCTGTTAGTAGATGCTGTAAATGGCGGTGTAGAAGAGTCGTTTATAATTGAGAA GCAGATTGAATCAGAGATACGAGCATTGGCAGCCACTATTACCCGGTTCATGAAGCAGAGTGATCAATGGTTATCTGCCACTCACGCTATGAACACTGCA ATCAAGGAAATTGGAGACTTTGAGAACTGGATGAAGGTGATGGAGTTCGATTGCAAAAGCATTGGCGCAGCTATCCATAACATTCACAAAGAGTGA
AA sequence Show only first row Show all	>Lus10030147 pacid=23172605 polypeptide=Lus10030147 locus=Lus10030147.g ID=Lus10030147.BGIv1.0 annot-version=v1.0 MERSQAEVGALEASLIHLVQDHQQAALHLREQTEKAKKDAIRKAVRVSNLLVDAVNGGVEESFIIEKQIESEIRALAATITRFMKQSDQWLSATHAMNTA IKEIGDFENWMKVMEFDCKSIGAAIHNIHKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	0	1
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	1.4	0.8463
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10021327 [exp]	2.0	0.8210
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	3.7	0.8135
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	6.8	0.8322
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	8.5	0.7908
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	8.8	0.7897
AT2G27830			unknown protein		Lus10000385 [exp]	8.9	0.7961
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	12.0	0.8022
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	12.6	0.8080
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	12.8	0.8024

Compare expression of checked genes

Lus10030147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.