Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) AT5G58400 393 / 3e-138 Peroxidase superfamily protein (.1) AT5G58390 367 / 2e-128 Peroxidase superfamily protein (.1) AT1G14550 341 / 8e-118 Peroxidase superfamily protein (.1) AT1G14540 319 / 3e-109 Peroxidase superfamily protein (.1) AT2G18150 298 / 7e-101 Peroxidase superfamily protein (.1) AT4G36430 296 / 6e-100 Peroxidase superfamily protein (.1) AT5G06720 292 / 1e-98 ATPA2 peroxidase 2 (.1) AT2G18140 288 / 8e-97 Peroxidase superfamily protein (.1) AT5G06730 287 / 3e-96 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009933 [exp] 501 / 0 AT5G05340 364 / 2e-126 Peroxidase superfamily protein (.1) Lus10009934 [exp] 486 / 8e-176 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1) Lus10030149 [exp] 447 / 3e-159 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10009932 [exp] 439 / 8e-155 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10034207 [exp] 395 / 3e-139 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10024209 [exp] 360 / 4e-125 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10006534 [exp] 347 / 3e-120 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 346 / 8e-119 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10032786 [exp] 339 / 3e-117 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156500 [exp] 449 / 2e-160 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 398 / 2e-140 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 396 / 6e-139 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 370 / 2e-129 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 369 / 8e-129 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 368 / 2e-128 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 366 / 5e-128 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 363 / 2e-126 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 362 / 4e-126 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 360 / 1e-125 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10030148 pacid=23172612 polypeptide=Lus10030148 locus=Lus10030148.g ID=Lus10030148.BGIv1.0 annot-version=v1.0 ATGAAGACAGTGAGATCCGCCGTGCAATCCGCCGTCTCCAAGGAAACAAGGGTGGCTGCCTCTCTTATCCGCTTGCATTTCCACGATTGTTTCGTCAACG GTTGTGATGGATCGATATTACTGGAAGACACAGCTTCGTTCACAGGAGAACAAACTGCTCTGCCCAATGCCGGATCAGTGAGAGGATTTAACGTAATCAA AGACATAAAGTCCAAGGTTGAGAAAGTCTGCCCAGGCGTCGTCTCCTGTGCCGACATCCTAGCCATCGCTGCTCGAGATTCCACCGCCATTGCAGGGGGC AAAAGTTGGAAGGTGAGGCTTGGAAGGAGGGATTCCAAAACAGCTAGTTTGGCTGCAGCAAACAGTGGAGTTATCCCTCCCCCTACCGCCACTCTTAACC AACTCATCACTCGCTTCCAAGCCAGAGGCCTCTCCGCTAAGGACATGGTCGTTCTCTCCGGATCCCACACGATTGGACAAGCTAGGTGCGTAACATTCAG GAACAGAATCTACAACGAGACCAACATCGACTCTTCGTTTGCAAGAGGCCGACAGCAGAAGTGCCCCAGGGCTCAAAACTCAGGGAACAACAATTTGGCC CCATTTGACGTTACGACTCCCAAGTTGTTAGACAACAAGTACTACCAGAACCTCATCCAGCAAAAGGGTCTTCTCCACTCTGACCAAGTCTTGTTCAACG GTGGATCGACTGATTCCCTTGTACGATCCTACAGTCGTAATCCAAAGGCCTTCGCCGCGGACTTTGCATCTGCGATGATCAAGATGGGAAGCATAAGTCC CCTCACTGGTTCTCAAGGCGAGATCAGGAAGATATGTAGCAGGCCTAACTAA
AA sequence Show only first row Show all	>Lus10030148 pacid=23172612 polypeptide=Lus10030148 locus=Lus10030148.g ID=Lus10030148.BGIv1.0 annot-version=v1.0 MKTVRSAVQSAVSKETRVAASLIRLHFHDCFVNGCDGSILLEDTASFTGEQTALPNAGSVRGFNVIKDIKSKVEKVCPGVVSCADILAIAARDSTAIAGG KSWKVRLGRRDSKTASLAAANSGVIPPPTATLNQLITRFQARGLSAKDMVVLSGSHTIGQARCVTFRNRIYNETNIDSSFARGRQQKCPRAQNSGNNNLA PFDVTTPKLLDNKYYQNLIQQKGLLHSDQVLFNGGSTDSLVRSYSRNPKAFAADFASAMIKMGSISPLTGSQGEIRKICSRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	0	1
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	1.7	0.7786
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	8.8	0.7124
AT2G31800			Integrin-linked protein kinase...		Lus10007432 [exp]	9.6	0.7753
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	10.5	0.7179
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	10.8	0.6953
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	15.9	0.6876
AT5G18260			RING/U-box superfamily protein...		Lus10035820 [exp]	16.0	0.6365
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	18.4	0.6928
					Lus10039654 [exp]	28.6	0.6873
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	29.6	0.7081

Compare expression of checked genes

Lus10030148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.