Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27580 115 / 3e-33 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 115 / 3e-33 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT1G12440 109 / 5e-31 A20/AN1-like zinc finger family protein (.1.2) AT4G14225 107 / 6e-31 A20/AN1-like zinc finger family protein (.1) AT4G25380 103 / 3e-29 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G22820 103 / 2e-28 A20/AN1-like zinc finger family protein (.1.2) AT2G36320 102 / 2e-28 A20/AN1-like zinc finger family protein (.1) AT3G52800 93 / 2e-24 A20/AN1-like zinc finger family protein (.1) AT1G51200 92 / 2e-24 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G12630 91 / 9e-24 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006671 [exp] 114 / 5e-33 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10007015 [exp] 114 / 6e-33 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 103 / 1e-28 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10003246 [exp] 102 / 2e-28 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10028903 [exp] 101 / 8e-28 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 100 / 2e-27 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10031262 [exp] 97 / 3e-26 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10015697 [exp] 86 / 1e-21 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10038901 [exp] 86 / 4e-21 AT4G25380 80 / 9e-19 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131900 [exp] 131 / 4e-40 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130000 [exp] 130 / 2e-39 AT4G22820 121 / 1e-35 A20/AN1-like zinc finger family protein (.1.2) Potri.015G131500 [exp] 119 / 3e-35 AT4G22820 114 / 3e-33 A20/AN1-like zinc finger family protein (.1.2) Potri.012G130100 [exp] 119 / 3e-35 AT4G22820 114 / 7e-33 A20/AN1-like zinc finger family protein (.1.2) Potri.001G115000 [exp] 112 / 3e-32 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 108 / 8e-31 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.003G205500 [exp] 106 / 8e-30 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G117100 [exp] 103 / 9e-29 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.001G018600 [exp] 103 / 1e-28 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.004G184300 [exp] 102 / 4e-28 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10030150 pacid=23172601 polypeptide=Lus10030150 locus=Lus10030150.g ID=Lus10030150.BGIv1.0 annot-version=v1.0 ATGTCTGAAACGCCCTGGCCATTATGCGCAAACGGCTGTGGATTCTTCGGGTCTGCCCAAAATCAGAACCTCTGCTCCAAGTGCTTCGTGGACTATCAGA AGAAGAAAGACGCTTTCCTCGCCAAAACTGCGGTCGTCAACGCCGCTTCATCGCTCAGGAGAAGGATGACAGCGACTAATCCAGAAGATCACCTAGGTAC TGATGATTCAGCCGTCGCCGCCGATTCGTCGTCGTCCCTCCGGCGACGGTGCAAGGCGTGCAAGAAGAAGGTGGGGCTGTTGGGATTCAAATGTCGGTGC GGGGAATTGTTCTGTGGGAGCCATCGCTACGCGGAAGAACACGCCTGCAGCTTTGACATCAAAGCAATGGGGCGAGAGATGTTGGCCAAGCAAAACCCTC TTTGCAAAGGCGATAAACTTGAATTCCGCTTGTAA
AA sequence Show only first row Show all	>Lus10030150 pacid=23172601 polypeptide=Lus10030150 locus=Lus10030150.g ID=Lus10030150.BGIv1.0 annot-version=v1.0 MSETPWPLCANGCGFFGSAQNQNLCSKCFVDYQKKKDAFLAKTAVVNAASSLRRRMTATNPEDHLGTDDSAVAADSSSSLRRRCKACKKKVGLLGFKCRC GELFCGSHRYAEEHACSFDIKAMGREMLAKQNPLCKGDKLEFRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12040		AtSAP7	stress-associated protein 7, A...		Lus10030150 [exp]	0	1
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10022656 [exp]	4.5	0.7639
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	7.4	0.7913
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	8.7	0.8196
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	14.4	0.8075
AT5G65490			unknown protein		Lus10002654 [exp]	14.6	0.7976
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	19.0	0.7519
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10016508 [exp]	20.3	0.8029
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	26.3	0.7562
AT1G78810			unknown protein		Lus10028833 [exp]	28.5	0.6505
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	38.0	0.6962

Compare expression of checked genes

Lus10030150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.