Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37730 275 / 2e-89 Protein of unknown function (DUF604) (.1) AT3G11420 263 / 6e-85 Protein of unknown function (DUF604) (.1) AT4G15240 188 / 2e-56 Protein of unknown function (DUF604) (.1) AT4G23490 183 / 4e-54 Protein of unknown function (DUF604) (.1) AT4G11350 179 / 7e-53 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 172 / 3e-50 Protein of unknown function (DUF604) (.1) AT1G05280 168 / 4e-49 Protein of unknown function (DUF604) (.1) AT1G33250 166 / 1e-47 Protein of unknown function (DUF604) (.1) AT1G07850 164 / 6e-47 Protein of unknown function (DUF604) (.1) AT1G01570 162 / 2e-46 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002713 [exp] 531 / 0 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10010869 [exp] 213 / 2e-68 AT2G37730 305 / 2e-101 Protein of unknown function (DUF604) (.1) Lus10024364 [exp] 209 / 4e-66 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 194 / 1e-58 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 189 / 2e-56 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10007923 [exp] 187 / 2e-56 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10036382 [exp] 186 / 2e-55 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10032293 [exp] 184 / 1e-54 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 177 / 2e-52 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199900 [exp] 335 / 2e-113 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 335 / 3e-113 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 282 / 2e-92 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 274 / 2e-89 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 199 / 6e-61 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 181 / 1e-53 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 181 / 3e-53 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 178 / 3e-52 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 178 / 4e-52 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 176 / 1e-51 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10030153 pacid=23153160 polypeptide=Lus10030153 locus=Lus10030153.g ID=Lus10030153.BGIv1.0 annot-version=v1.0 ATGGCGTTTGGTGGCGGAGGGTTCGCGATCAGCTACCCGCTTGCGCAGCGGTTAGTACAAGTCCTCGACGGTTGCCTTGAACGCTTTCATTATTTCTACG GCTCCGATCAAAGGATCTGGGCTTGTATCACGGAGCTCGGTGTGGGCCTCACCCCTCAATCCGGCTTTCACCAGTTGGACATCAGAGGGAGCGCCTACGG GCTTTTAGCAGCGCACCCGCTGTCACCTTTGATCTCTCTACACCATCTCGATTCATTGGAGCCGCTGTTTCCGGGCCAGGACCACATCACCTCTGTTAAG TCACTCTACAAGGCTTACCGGGTCGATCCACCCAGGATACTTCAGTCGGCCTATGGCTACGACCATTACTTCAACTGGTCCGTCTCTATCTCTTGGGGCT ACACTGTTCAGCTCTACCCTACCTTGGTGGCGGTCCACGACTTGCAAGTTCCGCTACAAACGTTCAAGACATGGAGAAGTTTCAGCGACGGGCCATTCAC ATTCAACACTCGTCCCACAGGTCCCGATCCATGCTCCATACCCGTTGTGTTCATGCTCGACAAGGTGGAGATGATCGGGACATGGGGCACCTTGACAGTT TACAAGAGGATGAACCCTGCCGTGATGTGCAAGAGACCAGACTTCATGCGAGCTATGTCTGTGCGGAGGATCGCTGTCACATCCCTCAAAATGGGGCCGG ATTACTGGTCCGGGGCGCCTAGAAGACAATGCTGTGAGATTGTGAATGGGGGAAGACCAAGGCGCGAGACGCTGCAGATTATTATTAGAATATGCGAGTC TAATGAAACAGTTAGCACTGCAGATTAA
AA sequence Show only first row Show all	>Lus10030153 pacid=23153160 polypeptide=Lus10030153 locus=Lus10030153.g ID=Lus10030153.BGIv1.0 annot-version=v1.0 MAFGGGGFAISYPLAQRLVQVLDGCLERFHYFYGSDQRIWACITELGVGLTPQSGFHQLDIRGSAYGLLAAHPLSPLISLHHLDSLEPLFPGQDHITSVK SLYKAYRVDPPRILQSAYGYDHYFNWSVSISWGYTVQLYPTLVAVHDLQVPLQTFKTWRSFSDGPFTFNTRPTGPDPCSIPVVFMLDKVEMIGTWGTLTV YKRMNPAVMCKRPDFMRAMSVRRIAVTSLKMGPDYWSGAPRRQCCEIVNGGRPRRETLQIIIRICESNETVSTAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37730			Protein of unknown function (D...		Lus10030153 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	8.7	0.7556
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	9.9	0.7970
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10035800 [exp]	20.3	0.7436
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	20.9	0.7929
AT5G05180			unknown protein		Lus10034251 [exp]	23.0	0.7728
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	24.0	0.7418
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013104 [exp]	33.2	0.7395
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	36.6	0.7453
					Lus10027448 [exp]	41.0	0.7169
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10037947 [exp]	41.7	0.7310

Compare expression of checked genes

Lus10030153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.