Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39740 380 / 2e-127 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT3G45750 120 / 4e-29 Nucleotidyltransferase family protein (.1.2) AT3G45760 96 / 3e-21 Nucleotidyltransferase family protein (.1.2) AT2G45620 82 / 2e-16 Nucleotidyltransferase family protein (.1) AT5G53770 57 / 2e-08 Nucleotidyltransferase family protein (.1) AT3G56320 56 / 4e-08 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 50 / 2e-06 Nucleotidyltransferase family protein (.1.2.3.4) AT3G51620 45 / 8e-05 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 42 / 0.0007 nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001012 [exp] 892 / 0 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10015854 [exp] 82 / 4e-16 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 76 / 2e-14 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 76 / 2e-14 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 66 / 4e-11 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10029045 [exp] 55 / 1e-07 AT3G56320 456 / 1e-153 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10025239 [exp] 53 / 5e-07 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10032691 [exp] 51 / 2e-06 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1) Lus10006095 [exp] 50 / 2e-06 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199500 [exp] 417 / 3e-142 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.002G151000 [exp] 74 / 1e-13 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 74 / 1e-13 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 71 / 8e-13 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.019G128800 [exp] 59 / 7e-09 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 55 / 9e-08 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 50 / 5e-06 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 48 / 1e-05 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 47 / 3e-05 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 45 / 0.0002 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030154 pacid=23153015 polypeptide=Lus10030154 locus=Lus10030154.g ID=Lus10030154.BGIv1.0 annot-version=v1.0 ATGAATGTGCCATTGGAATCTACTTTGCGGGAGATACTTGGTGTGATCGAACCTCAGCGGGAGGATTGGCTGTTGCGGCAAAGAATCATTCAAGAACTGC AAGATGTAGTAGCAACTGTTCCAAGTCTTAGAGGTGCTACAGTGGAGCCCTTCGGATCATTTGTGTCCAATCTTTTCACTCCATGGGGGGACTTGGATAT AACTATTATGCTCGATTTTGGTTCTTTCGTTTCAAATGCTGGGAAGAAGCGGAAAGTAACTTTACTTGGGGAAGTCTTAAGAGCTTTGAGGGAGAAAGGT GCTGGCCGATGGTGGAGGTTGCAATTTATACCAAATGCAAAAGTTCCAATTTTAAAATTTGAGAAAGGATCCCCTGCCATCTCTGGTGATATATCGATCG ACAATCTCGGTGGCCAAATGAAGTCCAAGTGCTTGTTCTGGCTCAATGAAATAGATGAGCGGTTTCGTCCAATGGTGTTACTGGTCAAGGAATGGGCCAA AGCCAATAAAATCAACAATCCCAAGTTTGGGACTCTGAACTCCTACTCCCTGAGTTTGCTTGTGGTCTTCCATTTTCAGACATGTGAGCCGGCAATCTTT CCTCCACTTAATGTTATATACCCAGGAAATGTGGGTGATGACCTTAAGGGTGTGAGGGAAGTAGCAGAAAAGAATATCACAGAAACTTTTCATGCAAACT TAAGAAGATTTACGGCAAACAGATCCAGACACTTGAACAGAAGCTCTTTGTCAGAGCTTTTTGTTTCATTCTTGGCAAAATTTTCTACCATACATGAGAA GGCTCAAGACTTTGGAATCTGCCCCTTCACAGCGAAGTGGGAACGTTTAGACGGCATCACAAGATGGTGTCCGCGGACCTTTGCTCTCTATGTAGAGGAT CCCTTCGAGCAGCCGTCAAATACCGCGAGAACTGTGAGCGCTGGAAACATGGGAAAAATACAGGAGGCGTTTCTAATAACCCGACGCAGCATTGTGACGC AGAATCTAGGTTGGATAGATCTCAACAGATTGCTGGTGAAGCCAGAGCTAATCCGGCTGATGATGATTAGGAAGCAAAACGCAAGTGGTGGTGGCCAAAT GCAATTTCCCCAGCAGACAATGAAGCATAATCCTGTGCAGGTTAGACCTCATCGAGGTCAAGGTGGAAGAGTGGAAAATCAGTCCAATACTTTGAAACCT CCTCAGAGAAATGGAAGTCAACAAAAGTTGTTTGCAAAGCCAAAGCAAGAGAGCGGGTCAAAGAGTAGTGTGCAGCAAGAAGAGAGCAATGGTAGTAACA AGATGAAGGAAGGGACACTGCAGGGAGATGTGAATAAGCCGCAGTTATGGAGGCCAAAGTACAACAACAAAGATACCAACATTAAAGATAGTAATCATAA GCCTCTTATCCTATAG
AA sequence Show only first row Show all	>Lus10030154 pacid=23153015 polypeptide=Lus10030154 locus=Lus10030154.g ID=Lus10030154.BGIv1.0 annot-version=v1.0 MNVPLESTLREILGVIEPQREDWLLRQRIIQELQDVVATVPSLRGATVEPFGSFVSNLFTPWGDLDITIMLDFGSFVSNAGKKRKVTLLGEVLRALREKG AGRWWRLQFIPNAKVPILKFEKGSPAISGDISIDNLGGQMKSKCLFWLNEIDERFRPMVLLVKEWAKANKINNPKFGTLNSYSLSLLVVFHFQTCEPAIF PPLNVIYPGNVGDDLKGVREVAEKNITETFHANLRRFTANRSRHLNRSSLSELFVSFLAKFSTIHEKAQDFGICPFTAKWERLDGITRWCPRTFALYVED PFEQPSNTARTVSAGNMGKIQEAFLITRRSIVTQNLGWIDLNRLLVKPELIRLMMIRKQNASGGGQMQFPQQTMKHNPVQVRPHRGQGGRVENQSNTLKP PQRNGSQQKLFAKPKQESGSKSSVQQEESNGSNKMKEGTLQGDVNKPQLWRPKYNNKDTNIKDSNHKPLIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	0	1
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	2.0	0.9351
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	2.6	0.9268
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	3.0	0.9301
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	3.2	0.9275
AT3G62140			unknown protein		Lus10009976 [exp]	3.3	0.9209
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	4.0	0.9311
AT3G62140			unknown protein		Lus10038035 [exp]	4.9	0.9259
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	4.9	0.9269
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	7.1	0.9232
AT5G09960			unknown protein		Lus10006803 [exp]	7.7	0.9183

Compare expression of checked genes

Lus10030154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.