Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39750 1045 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 998 / 0 Putative methyltransferase family protein (.1) AT1G77260 902 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 498 / 2e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 499 / 3e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 494 / 1e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 486 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 484 / 4e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 489 / 3e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 478 / 2e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001013 [exp] 1314 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 1144 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 1101 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042762 [exp] 667 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029731 [exp] 660 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 647 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 561 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 500 / 6e-168 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 497 / 1e-166 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059500 [exp] 1088 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 1062 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 884 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 509 / 2e-169 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 496 / 3e-168 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 489 / 1e-162 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 486 / 6e-162 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 486 / 1e-161 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 489 / 1e-160 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 482 / 2e-160 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030155 pacid=23153106 polypeptide=Lus10030155 locus=Lus10030155.g ID=Lus10030155.BGIv1.0 annot-version=v1.0 ATGAAAGCGACGGCCAGTTTGGATCTTTTCAAAACTCCTCTCGCTATCAAGATCGCCGCCTTCACCTTGATTACACTCACCTTCTTCTACTTGGGCAAGC ACTGGAGCAGCAGCTCTAATGCCTACCAACAGGCTGTTTTCTTCTCTTCTACACCAGGCACGTCTGTCGGCATCTCTCCCAACTACGTCAAGTCGTTTAA TGTCACTGCTCTGATAGCTCAGAACCAGACCGATACCGAATCTGAACATGAGCTCCCTCGGCAACCGGACACTGCTTCAGTTGCTGTGGACCAGCCTCCT CCTCCGGCGGCGGCATCGGATCGGACGTTTGGGATAATCGACGGAGATGGTAAAATGAGCGATGATTTTCAGGTGGGGGAGGTGGATCCAGAGGTTGTGG ACAATTGGGGGAATCAGACTGGGATTGAGAGTGAAGTTAGTAAGGGTTTTAGGGTAAGCGTTAAGAAATTCGAGCTGTGCCCTGAGAGCAGGAGAGAGTA TATTCCCTGTTTGGACAATGTAGAGGCAATCAAGAGGTTGAGATCGACGGAGAAAGGGGAGAGATTTGAGCGGCATTGTCCTGAGAAAGGGAAAGAGTTG AATTGCTTGGTTCCACCGCCCAAAGGGTACCGCCAACCAATCCCATGGCCCCGGAGTCGTGACGAGGTTTGGTTTTCCAATGTCCCCCACACACGGTTGG TTGAAGATAAGGGAGGTCAGAACTGGATTACCAAAGATTTTGATAAGTTCAAGTTCCCTGGCGGTGGGACGCAGTTCATACATGGCGCAGATCAATATTT GGATCAGATTTCTAAGATGGTCCCAGATATTGCTTTTGGTAATCACACGAGGGTAGTTCTGGATGTTGGGTGTGGTGTAGCAAGTTTCGGTGCATATCTA TTATCCCGAGAGGTCTTACCGTTGTCAATAGCTCCTAAAGATGTTCATGAGAACCAGATCCAATTTGCTCTTGAGCGTGGTGTCCCTGCCATGGTGGCTG CGTTTTCAACTCATCGGCTGCTGTATCCAAGCCAGGCTTTTGAAATAATCCACTGTTCAAGATGTAGGATCAATTGGACTCGTGATGATGGAATCTTGCT ACTTGAGGTCAACAGGATGATGCGAGGTGGAGGATACTTTGTTTGGGCAGCCCAGCCAGTCTACAAGCATGAGCAAGCACTGGAGGAACAGTGGGAAGAG ATGCTTAACCTTACAACTAGACTTTGCTGGGAGCTTGTGAAGAAGGAAGGGTATATTGCAATATGGCAGAAGCCCAAGAATAATCGCTGCTATTTGAGTC GAGAAATCGGAGTTAGTCCTCCATTATGTGAACCTGACGATGATCCCGATAAAGTTTGGTATGTTGATTTAAAACCATGCATTACTCGTATTCCTGAGAC TGGATATGGCGCCAATGTAACTACTTGGCCGGCTCGTCTACATACTCCTCCTGATAGGCTTCAGAGTATACAAATGGATGCTTATATTTCCAGAAAAGAT CTTTTCAAGGCTGAATCAAAATATTGGTCTGAAATAATAGCTGGCTATGTGCGTGCTTGGCATTGGAAGCAGCTTAAGCTTAGGAATGTCTTGGACATGA AGGCCGGTTTTGGAGGATTTGCTGCTGCACTAATTGATCATGGATTCAATAGCTGGGTTCTAAATGTCATTCCAGTAAGTGGGCCAAACACACTGCCTGT CATATATGACCGTGGACTCATCGGTGTCATGCATGACTGGTGTGAGCCGTTCGACACATACCCAAGAACCTATGATTTATTGCATGCTTCTGGGCTTTTC GCAGTTGAAAGGAAAAGATGTAGCATGTCTAGCATAATGCTTGAAATGGATCGCATACTTAGGCCTGGGGGTCGAGTATACATCCGTGATATCCTTGATG TCATGGAAGAACTTCAAGAGATTGCCAAAGCCATGGGTTGGCATACGGCCTTACACGACACATCCGAGGGTCCTCATGCAAGTTATAGGATTTTGGTCTG CGATAAACGTCTTTTGCGTTCTTGA
AA sequence Show only first row Show all	>Lus10030155 pacid=23153106 polypeptide=Lus10030155 locus=Lus10030155.g ID=Lus10030155.BGIv1.0 annot-version=v1.0 MKATASLDLFKTPLAIKIAAFTLITLTFFYLGKHWSSSSNAYQQAVFFSSTPGTSVGISPNYVKSFNVTALIAQNQTDTESEHELPRQPDTASVAVDQPP PPAAASDRTFGIIDGDGKMSDDFQVGEVDPEVVDNWGNQTGIESEVSKGFRVSVKKFELCPESRREYIPCLDNVEAIKRLRSTEKGERFERHCPEKGKEL NCLVPPPKGYRQPIPWPRSRDEVWFSNVPHTRLVEDKGGQNWITKDFDKFKFPGGGTQFIHGADQYLDQISKMVPDIAFGNHTRVVLDVGCGVASFGAYL LSREVLPLSIAPKDVHENQIQFALERGVPAMVAAFSTHRLLYPSQAFEIIHCSRCRINWTRDDGILLLEVNRMMRGGGYFVWAAQPVYKHEQALEEQWEE MLNLTTRLCWELVKKEGYIAIWQKPKNNRCYLSREIGVSPPLCEPDDDPDKVWYVDLKPCITRIPETGYGANVTTWPARLHTPPDRLQSIQMDAYISRKD LFKAESKYWSEIIAGYVRAWHWKQLKLRNVLDMKAGFGGFAAALIDHGFNSWVLNVIPVSGPNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHASGLF AVERKRCSMSSIMLEMDRILRPGGRVYIRDILDVMEELQEIAKAMGWHTALHDTSEGPHASYRILVCDKRLLRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	0	1
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	1.0	0.9384
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	2.0	0.8918
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	3.5	0.8827
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	7.7	0.8879
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	7.7	0.8602
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	9.5	0.8452
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	9.9	0.8580
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	10.0	0.8626
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	11.2	0.8648
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	11.6	0.8753

Compare expression of checked genes

Lus10030155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.