Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 501 / 1e-179 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 474 / 8e-169 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 361 / 1e-124 Glucose-1-phosphate adenylyltransferase family protein (.1) AT1G74910 129 / 6e-34 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 125 / 2e-32 ADP-glucose pyrophosphorylase family protein (.1) AT2G34970 50 / 2e-06 Trimeric LpxA-like enzyme (.1) AT5G19485 47 / 2e-05 transferases;nucleotidyltransferases (.1) AT3G02270 46 / 3e-05 Trimeric LpxA-like enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004699 [exp] 531 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 531 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 499 / 1e-178 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 354 / 4e-122 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 239 / 2e-79 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10042942 [exp] 122 / 3e-31 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10032440 [exp] 121 / 5e-31 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10014608 [exp] 102 / 1e-25 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10039916 [exp] 98 / 8e-24 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060100 [exp] 510 / 0 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 509 / 0 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 493 / 2e-176 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 460 / 3e-163 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 124 / 4e-32 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 123 / 1e-31 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 52 / 3e-07 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10030156 pacid=23153011 polypeptide=Lus10030156 locus=Lus10030156.g ID=Lus10030156.BGIv1.0 annot-version=v1.0 ATGAAGGCTCTCATCCTTGTTGGAGGGTTCGGAACACATTTGAGGCCATTGACCCTTAGTGTACCCAAGCCTCTTGTTGAATTTGCTAACAAACCCATGA TCCTTCATCAGATCGAAGCTTTGAAGGCGGTTGGAGTGACAGAGGTGGTTTTGGCTATCAATTACCAGCCAGAGGTGATGATGAACTTCTTGAAGGAATT CGAGGCAAAACTTGGCATTAAGATCACATGTTCACAGGAGACTGATCCCCTCGGGACTGCTGGTCCTCTGGCTCTTGCTAGGGACAAGCTAATGGATAAG TCTGGTGAACCGTTTTTAGTCCTCAACAGCGATGTCATCAGCGAGTACCCTTTCAGGGAAATGATAGCATTTCACAAATCTCACGGTGGGGAGGCTTCTA TCATGGTCACCAAGGTTGATGAGCCATCAAAATACGGTGTGGTTGTCATGGATGAAGCTACAGGGCAAGTTGAGAAATTTGTTGAAAAGCCAATGTTGTT CGTCGGCAATAAAATCAATGCAGGAATTTACCTGTTGAACCCTTCTGTCCTGGATCGAATTCAGCTGAGACTAGCTTCAATTGAGAAAGAGCCAAGAGAC TACATTACAGGGTTGAGACTTTACCTCGATTCCCTGAGGAGGAACAACAAGTCCTCATCGAGATTGGCCACTGGGTCCCACATAGTTGGCAATGTGTTGG TGGACGAGACGGCCAAGATAGGCGAGGGATGTTTGATCGGTCCTGACGTGGCCATAGGTCTGCACTGCGTTGTGGAGGTGGGTGTCAGACTGTCCCGTTT GCACCGTGATGCGTGGGGTCCGCATAAAGAAGCACGCCTGCGTTTCGAGCAGCATCATCGGCTGGCACTCCACGTTGGCCAATGGGCTCGCGTCGAGAAC ATGACGATCCTGGGAGTGGATGTACATGTGTGCGACGAGGTTTACAACAACGGAGGTGTTGTTTTGCCCCACAAGGAGATCAAGTCGAGCATTTTGAAGC CGGAGATTGTGATGTGA
AA sequence Show only first row Show all	>Lus10030156 pacid=23153011 polypeptide=Lus10030156 locus=Lus10030156.g ID=Lus10030156.BGIv1.0 annot-version=v1.0 MKALILVGGFGTHLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMMNFLKEFEAKLGIKITCSQETDPLGTAGPLALARDKLMDK SGEPFLVLNSDVISEYPFREMIAFHKSHGGEASIMVTKVDEPSKYGVVVMDEATGQVEKFVEKPMLFVGNKINAGIYLLNPSVLDRIQLRLASIEKEPRD YITGLRLYLDSLRRNNKSSSRLATGSHIVGNVLVDETAKIGEGCLIGPDVAIGLHCVVEVGVRLSRLHRDAWGPHKEARLRFEQHHRLALHVGQWARVEN MTILGVDVHVCDEVYNNGGVVLPHKEIKSSILKPEIVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10030156 [exp]	0	1
AT5G67090			Subtilisin-like serine endopep...		Lus10009365 [exp]	7.1	0.8951
					Lus10000028 [exp]	12.2	0.8937
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	13.9	0.8918
					Lus10006075 [exp]	16.6	0.8907
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	16.9	0.7961
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	18.5	0.8468
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	19.0	0.8613
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	22.8	0.8836
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	23.8	0.8858
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	23.9	0.8381

Compare expression of checked genes

Lus10030156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.