Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39800 980 / 0 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) AT3G55610 974 / 0 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001018 [exp] 624 / 0 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001019 [exp] 603 / 0 AT3G55610 519 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10001016 [exp] 558 / 0 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004697 [exp] 524 / 0 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10004696 [exp] 503 / 4e-173 AT3G55610 492 / 3e-170 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040262 [exp] 490 / 2e-168 AT3G55610 480 / 3e-166 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040264 [exp] 486 / 2e-165 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10040263 [exp] 485 / 4e-164 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10005468 [exp] 166 / 7e-47 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198400 [exp] 1065 / 0 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4) Potri.008G060200 [exp] 1020 / 0 AT2G39800 1009 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10030158 pacid=23153134 polypeptide=Lus10030158 locus=Lus10030158.g ID=Lus10030158.BGIv1.0 annot-version=v1.0 ATGAACGATGCCGCCCAAAGCTCGAGAGGCTTTGTTAAGGACGTCAAGCGTCTCGTCGTCAAAGTTGGGACTGCTGTTGTCACTAGAGGTGATGGCAGAT TGGCGCTTGGGAGATTAGGGGCTCTCTGTGAGCAGATTAAAGAGCTCAATTACCAGCACTATGAAGTCATTGTTGTCACGTCTGGTGCTGTTGGCCTTGG CCGCCAAAGGCTCAAATACCGCAAGTTAGTCAATAGCAGTTTTGCTGATCTTCAGAAGCCACAGGGTGATCTCGATGGCAAGGCTTGTGCTGCTGTTGGC CAAAACAGTATCATGGCTCTCTATGACACATTGTTCAGTCAGCTGGATGTGTCATCTGCTCAACTTCTTGTGACTGATAATGATTTTAGGGATAGAGACT TCAGGAAGCAACTTAAGGAAACTGTGGAGTCACTGCTATCACTTAGGGTGGTTCCCATTTTTAACGAAAATGATGCAGTCAGTACCAGGAAAGCTCCTTA TGAGGATTCTTCTGGTATATTCTGGGATAACGACAGTTTGGCTGCTTTGTTGGCGTTGGAGCTAAAGGCTGATCTTCTTGTTCTGCTCAGTGATGTGGAC GGCCTTTATAGTGGTCCACCAAGCGACCCAAATTCAAAGCTGATTCGTACATACATTAAAGAAGTACATATGGGTGGAATTACTTTTGGAGACAAATCCA GACTTGGAAGAGGGGGCATGACAGCCAAAGTTAAAGCTGCCGTCAATGCCTCTAATGCTGGTGTTCCTGTTATTATAACTAGTGGATATGCTCCTGAGAA TATAATTAAAGTTCTCCAAGGAGATGCTATTGGCACTCTCTTTCATCGCGATGCTCATTTGTGGGTTACATGCAAAGACACCGATGCCCGTGACATGGCA GTTGCAGCAAGGGAATGTTCCAGACGGCTGCAGGCATTATCATCGGAAGACAGGAAAAATATTTTGCTGGAGATAGCCGATGCCCTCGAAGCCAATGAGA GAATAATCAAGGTTGAAAATGATGCAGATGTTGCTGCTGCAGAAGAGGCTGGTTTGGAGAAACCCTTGATAGCAAGACTTGCTCTAAAGCCTGGGAAGGC AAGAAAGTGTTTTATTGCAAACCTTGCAAATTCAATCCGCGTCCTTGCCAGCATGGAAGATCCAGTTGGTCATGTATTGAAAACTACTGAACTTGCAGAG GGCCTTGTCTTAGAGAAGACATCATCTCCTCTAGGTGTTCTCCTGATTGTGTTTGAGGCTCGACCTGATGCACTAGTTCAGATAGCTTCATTGGCGATAC GCAGTGGAAATGGTCTCTTACTGAAAGGTGGAAAAGAGGCCAGGCGATCAAATGCAATTTTGCACAAGGTAATCACTGATGCAATTCCTGACGAAGTCGG GGGAAGACTTATCGGACTTGTGACTTCGAGAGACGAAATTCCTGACCTCCTTAAGCTTGATGATGTGATTGATCTTGTGATTCCTAGAGGCAGCAACAAA ATGGTTTCTACTATCAAAGCATCAACTAAAATTCCTGTTCTGGGTCATGCCGATGGAATTTGTCATGTATATGTTGACAAGTCTGCTAATATAACAACTG CGAAGCATATTGTGCTGGATGCAAAAGTAGATTATCCAGCTGCCTGTAATGCAATGGAAACGCTTTTGGTGCACAAGGATTTAGTGCCCACTAAAGGTCT AACCGAGCTAATAGTTGGGCTTGGGAGTGAAGGTGTCATTCTATATGGCGGGCCTAGGGCAAGCAAGCAGCTAAGCATTCCAGAGACAGCCTCATTGCAT CACGAGTACAGCTCCCTGGCATGCACTGTTGAGATTGTTGATGACGTCCATGCTGCCATTGAACACATACATCGACATGGAAGTGCACATACTGATTGCA TCGTTGCTGAAGACAGAGAAGTTGCAGAGACATTTTTGCGACAAGTTGACAGTGCTGCTGTTTTCCACAATGCGAGCACAAGATTCTGCGATGGAGCTCG ATTTGGATTGGGGGCAGAGGTTGGAATAAGTACGAGTAGAATCCATGCTCGAGGCCCTGTTGGAGTTGAAGGACTGTTAACGACCCGGTGGATATTGAGA GGCAGTGGACAAGTAGTGGATGGTGATAAGGGAGTGATCTACACCCACAAGAATATAACTATATAG
AA sequence Show only first row Show all	>Lus10030158 pacid=23153134 polypeptide=Lus10030158 locus=Lus10030158.g ID=Lus10030158.BGIv1.0 annot-version=v1.0 MNDAAQSSRGFVKDVKRLVVKVGTAVVTRGDGRLALGRLGALCEQIKELNYQHYEVIVVTSGAVGLGRQRLKYRKLVNSSFADLQKPQGDLDGKACAAVG QNSIMALYDTLFSQLDVSSAQLLVTDNDFRDRDFRKQLKETVESLLSLRVVPIFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVD GLYSGPPSDPNSKLIRTYIKEVHMGGITFGDKSRLGRGGMTAKVKAAVNASNAGVPVIITSGYAPENIIKVLQGDAIGTLFHRDAHLWVTCKDTDARDMA VAARECSRRLQALSSEDRKNILLEIADALEANERIIKVENDADVAAAEEAGLEKPLIARLALKPGKARKCFIANLANSIRVLASMEDPVGHVLKTTELAE GLVLEKTSSPLGVLLIVFEARPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITDAIPDEVGGRLIGLVTSRDEIPDLLKLDDVIDLVIPRGSNK MVSTIKASTKIPVLGHADGICHVYVDKSANITTAKHIVLDAKVDYPAACNAMETLLVHKDLVPTKGLTELIVGLGSEGVILYGGPRASKQLSIPETASLH HEYSSLACTVEIVDDVHAAIEHIHRHGSAHTDCIVAEDREVAETFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR GSGQVVDGDKGVIYTHKNITI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10030158 [exp]	0	1
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	2.4	0.8453
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	11.4	0.8268
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	12.5	0.8268
AT5G08540			unknown protein		Lus10010158 [exp]	13.0	0.8023
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	18.7	0.7921
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	19.1	0.7558
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10012940 [exp]	19.7	0.7992
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	21.9	0.8123
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	30.4	0.8162
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	35.4	0.7785

Compare expression of checked genes

Lus10030158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.