Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39805 223 / 4e-72 Integral membrane Yip1 family protein (.1.2) AT5G27490 101 / 5e-25 Integral membrane Yip1 family protein (.1) AT3G05280 87 / 9e-20 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004695 [exp] 273 / 4e-92 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10001020 [exp] 197 / 1e-61 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10004473 [exp] 100 / 1e-24 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10029935 [exp] 97 / 2e-23 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10015189 [exp] 95 / 1e-22 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) Lus10031511 [exp] 93 / 5e-22 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060300 [exp] 261 / 4e-87 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) Potri.010G198300 [exp] 248 / 3e-82 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2) Potri.005G033900 [exp] 96 / 3e-23 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 90 / 7e-21 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030159 pacid=23152969 polypeptide=Lus10030159 locus=Lus10030159.g ID=Lus10030159.BGIv1.0 annot-version=v1.0 ATGGAGGACGACTCCTTCACTAATCTCCCTACTAGCCACTTGATTGGCTCCGTCCCCTCTGTTCGTAAGTTCGTTAGAACTGTTTGTTTTGCTCTTTTGT ATAGTTGCAATGATGGAGGCTGTCAGATTGATTTTGCGTTGCTAGCTAGTCAGGAAGGAATGGCTGTGGTGACTGAAGAAAAAAGTCCTAGAAACTATGA AGTCCCCGTGGCAAATATGCAGACGTTCCCTCCAGCTAGTAATGCACGGGGAAGCGGAGTAGGCGGCAGCAGCAGCAACAATAACAACAGGGGTTATCAA ACTATGGGAGCTCCGACTGATGGAGTTGAACAACAAGGACCGCCAACCACTTGGAAAGGAGTATTTAGTATCTCATCGTATATACAATATTTCAATGTCG ATACGGATATTGTCGTGAACAGATTGATGAGCTCCTTCTATCCCATAGGGGGTGATTTCTTCAGCAAGATCGATGCCAATCCAGACTTACTCACTAGCGC TAGTTTGTTTGGATCCGTAAATGCAGCGGCAGTTGCCATCTATGGCTACGTAATCATTGTTCCAATGGGCTTTTACTTCTTGCTTCGGTATCTTGGACTG AGTGCAAGCCTGATACGATTTTGGTGCATGTGGGGATATTCTCTCTTCATATTCGTCCTATGTTCTGTACCGTTGATTATCCCTGTAGAGTTTCTACGGT GGGTGATCATACTAGCAGCTGGAGTTGATTCAGCTTGCTTCGTGACTGCAAATCTGAAAACCGTCGTGCAAGGAGGTGATCTTACAATCGTGTTGGTAGC GTCATTTGTATTGCAACTGGCTCTATCGATCTTCATCAAAGTCTGGTTCTTCCCCTAA
AA sequence Show only first row Show all	>Lus10030159 pacid=23152969 polypeptide=Lus10030159 locus=Lus10030159.g ID=Lus10030159.BGIv1.0 annot-version=v1.0 MEDDSFTNLPTSHLIGSVPSVRKFVRTVCFALLYSCNDGGCQIDFALLASQEGMAVVTEEKSPRNYEVPVANMQTFPPASNARGSGVGGSSSNNNNRGYQ TMGAPTDGVEQQGPPTTWKGVFSISSYIQYFNVDTDIVVNRLMSSFYPIGGDFFSKIDANPDLLTSASLFGSVNAAAVAIYGYVIIVPMGFYFLLRYLGL SASLIRFWCMWGYSLFIFVLCSVPLIIPVEFLRWVIILAAGVDSACFVTANLKTVVQGGDLTIVLVASFVLQLALSIFIKVWFFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	0	1
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	3.7	0.7864
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	4.1	0.8318
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10036135 [exp]	4.5	0.7570
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	7.7	0.7831
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	10.2	0.7717
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	18.1	0.7810
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	18.4	0.7801
AT5G50970			transducin family protein / WD...		Lus10032536 [exp]	20.1	0.7389
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	21.8	0.7301
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	21.9	0.7657

Compare expression of checked genes

Lus10030159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.