Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11397 281 / 3e-97 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT5G05987 281 / 5e-97 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT5G02040 273 / 3e-94 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT3G11402 281 / 3e-89 Cysteine/Histidine-rich C1 domain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001021 [exp] 373 / 4e-133 AT5G05987 301 / 1e-104 prenylated RAB acceptor 1.A2 (.1) Lus10022592 [exp] 278 / 5e-96 AT5G02040 298 / 9e-104 prenylated RAB acceptor 1.A1 (.1.2) Lus10021492 [exp] 277 / 1e-95 AT5G02040 297 / 1e-103 prenylated RAB acceptor 1.A1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198000 [exp] 319 / 5e-112 AT5G05987 253 / 3e-86 prenylated RAB acceptor 1.A2 (.1) Potri.008G060400 [exp] 315 / 2e-110 AT3G11397 266 / 4e-91 prenylated RAB acceptor 1.A3 (.1) Potri.006G091300 [exp] 290 / 2e-100 AT5G02040 320 / 1e-112 prenylated RAB acceptor 1.A1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10030160 pacid=23153201 polypeptide=Lus10030160 locus=Lus10030160.g ID=Lus10030160.BGIv1.0 annot-version=v1.0 ATGGATTGGGGAAGTGTAACGGCCGATGATCTGGTCGGAGCTCTAAGAGAAGTCGACTGGTCCACTCCGCCTCGTCCTCTCAGCGAATTCTTCTCCAGAT TCAACATCACCAGATCTTACCCCAAGTGGAGCAGCCGCCTCAAATGCAATCTATATTATTACAGGACGAACTACTTCATTATGATTGTATTCATTCTCGG TATTGCATGTATCATGAGGCCCTTGGCCATCGTTGCTGCTGCTTTGACAGCTCTAAGCTTTGCTTTTCTTAACGATAGTTTTGCCACCACTTTTAGTGAG AAGACGACAAGAACTGTGAGGAAGTTCTCTCCTCATTTGGCAGCAAAGATGAGACCTTCTCACATGCCAGTCATCCGAGGTCGCCCATCATCAAAGAAGA CATTATACATCTGTGGTCAGCCTCGTGGGGCGTTTGTGTCTCTTTTCACTTCTGCCAGTTTGATCATGTGGTTCGCTTCTGGCAGCTTGTCCACTGTTTT GTGGGCATTCGTGATTGCCCTCCTGGCGACCATCATCCATGCAAGTGTGAGAACACCTAATCTCAAAGCAAGACTGAACACATTCAGGGAGGAGTTCCGC TCCGTCTGGCGCAACTACAGTGACCTCTGA
AA sequence Show only first row Show all	>Lus10030160 pacid=23153201 polypeptide=Lus10030160 locus=Lus10030160.g ID=Lus10030160.BGIv1.0 annot-version=v1.0 MDWGSVTADDLVGALREVDWSTPPRPLSEFFSRFNITRSYPKWSSRLKCNLYYYRTNYFIMIVFILGIACIMRPLAIVAAALTALSFAFLNDSFATTFSE KTTRTVRKFSPHLAAKMRPSHMPVIRGRPSSKKTLYICGQPRGAFVSLFTSASLIMWFASGSLSTVLWAFVIALLATIIHASVRTPNLKARLNTFREEFR SVWRNYSDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	1.0	0.9126
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	2.0	0.9035
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	2.2	0.8952
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	3.5	0.8976
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	3.7	0.8825
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	4.2	0.8752
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	5.5	0.8539
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	6.0	0.9004
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	7.4	0.8693
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	8.5	0.8825

Compare expression of checked genes

Lus10030160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.