Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05980 673 / 0 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G55630 578 / 0 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT3G10160 566 / 0 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) AT5G41480 134 / 2e-33 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001023 [exp] 891 / 0 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10040261 [exp] 827 / 0 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 810 / 0 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10014939 [exp] 119 / 3e-28 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10038824 [exp] 119 / 3e-28 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060600 [exp] 751 / 0 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 732 / 0 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.016G041800 [exp] 566 / 0 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.006G045400 [exp] 556 / 0 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.015G022400 [exp] 116 / 2e-27 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [flax] [poplar] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Lus10030161 pacid=23153006 polypeptide=Lus10030161 locus=Lus10030161.g ID=Lus10030161.BGIv1.0 annot-version=v1.0 ATGGAAGATGAGAAATTGGCGGCTAGAAATAGACAGAAAGGGCAGCTATGCTGCAGTGGCCACTCACTCCCGCCGCACCCAGCGCTACCACATGACCATA TCCCAACTGCTCTTTGTCCTTTTCCGGTGCCTTTCAAGGGCAATTCCGCGAATTCCACTGCATCGGAATATACAAACGGAATCCCCGCTCTTCCGGATTC AATCGTTGTTCTCGCCATCCACCTCCTCCTCTCCTTCCATTCTCCGGTTCCATCCGAATGGCGGACGCTACTATTGAATGTCGTACGTGAATTCACAGGC GGCAATGAATCCGCGAGACCGTACGATAAGGCAATGGACGCTTTGTCTTCTTTGATAACAAAGCGGAGTCGTGGTGATAAGAGTACCAAGGGAGATGGAT TCCATTTTCTCTTCGATTACCTCAAGATACTGGACCTGGAGGATGCGTTGGCGGATTTGAAAATTGTTCATGTGGCAGGCACCAAAGGGAAGGGATCCAC ATGTACCTTCACGGAGTCTATACTAAGGAATTGTGGCTTTAGAACAGGGCTTTTCACATCACCTCACCTCATTGATGTCAGAGAAAGGTTTCGATTGGAT GGCGCTGATATATCCGAGGAGAAATTTTTGATCTATTTCTGGTGGTGTTTCAACAGATTAAAGGAAAGGACAACAAAAGATTTACCGATGCCTCCTTTGT TTCGTTTTCTTACATTGCTTGCCTTCAAGATCTTTGCAGCAGAGCAGGTAGACGTCGCAATTTTGGAAGTTGGACTGGGTGGGAGGTTTGACGCTACAAA TGTGATTCAGAAACCTGTTGTATGTGGCATAACGTCCCTTGGGTACGACCACATGGAAATTCTTGGGAACACCCTTGGAGAAATTGCTGGTGAAAAAGCT GGCATTCTAAAGCATGGTGTTCCTGCGTTTACAGTCCAGCAACCCGAGGAAGCAATGCGTGTGCTTGAAGAGAAAGCTTCAAGTTTAAATGTAGATCTTC AAGTTGTGCTCCCGTTGGATGCCAATTTACTCAACGGCCTAAAACTTGGACTTGAAGGTGAGCACCAATATGTCAATGCTGGTCTGGCCATTTCACTTTC TTTCAATTGGCTAAAGAGGACAGGGCATCTTGAACTTGCCAACCAGGAACACACTGGCTCACTACCTGAGCAGTTTATCAAGGGCTTAACAACAGCTAGT TTTCAAGGCCGGGCTCAAATCGTCGGTGATCAATATGTAGATAATGAAAATGACGGGGACCTCATCTTTTATTTGGATGGTGCCCACAGTCCCGAAAGCA TGGATATATGTGCAAGATGGTTTTCTGGTGCTGTTAAAGGTGGAAAGGAGCATGATACAGTCACACCCCAATTGAGTTCATCTACACATCAATTAAAGAA GAATATCATGCAGATACTCTTGTTCAACTGCATGACAGTGCGTGATCCTCAGTTGCTTCTTCCACCATTATTGAAAACATGTTCTAGTCAAGGTGTCGAC TTTAAGAAGGCACTCTTCGTACCAAATATGTCGGTTTACCATAAGGTCGGAACTCCTTCGTTACCATCATCTGATACGAAAGTTGATTTGTCATGGCAGA CTTCTCTTCAAAGAGTGTGGGAAAATGCCGTGAAGACTAGAAATGGAAGGGAGACAAATGCGTCCGATGAAATAAAGAATGATTCAGGAGCAAGTGCTGG GAGTTGTGAGAATAGTGCAGTCTTTCCTTCTCTACCTTTGGCTATCAAATGGCTGAGAGACAGTGTCAAACAGAATCAGTCTGTCCGGTTCCAGGTCCTT GTTACGGGTTCGTTACATCTCATTGGCGACGTATTGAAACTAATAAGGAAATAG
AA sequence Show only first row Show all	>Lus10030161 pacid=23153006 polypeptide=Lus10030161 locus=Lus10030161.g ID=Lus10030161.BGIv1.0 annot-version=v1.0 MEDEKLAARNRQKGQLCCSGHSLPPHPALPHDHIPTALCPFPVPFKGNSANSTASEYTNGIPALPDSIVVLAIHLLLSFHSPVPSEWRTLLLNVVREFTG GNESARPYDKAMDALSSLITKRSRGDKSTKGDGFHFLFDYLKILDLEDALADLKIVHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLD GADISEEKFLIYFWWCFNRLKERTTKDLPMPPLFRFLTLLAFKIFAAEQVDVAILEVGLGGRFDATNVIQKPVVCGITSLGYDHMEILGNTLGEIAGEKA GILKHGVPAFTVQQPEEAMRVLEEKASSLNVDLQVVLPLDANLLNGLKLGLEGEHQYVNAGLAISLSFNWLKRTGHLELANQEHTGSLPEQFIKGLTTAS FQGRAQIVGDQYVDNENDGDLIFYLDGAHSPESMDICARWFSGAVKGGKEHDTVTPQLSSSTHQLKKNIMQILLFNCMTVRDPQLLLPPLLKTCSSQGVD FKKALFVPNMSVYHKVGTPSLPSSDTKVDLSWQTSLQRVWENAVKTRNGRETNASDEIKNDSGASAGSCENSAVFPSLPLAIKWLRDSVKQNQSVRFQVL VTGSLHLIGDVLKLIRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10001023 [exp]	1.0	0.8065
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	4.9	0.7811
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	6.0	0.8030
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	7.0	0.7754
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	7.5	0.7489
AT5G55060			unknown protein		Lus10043118 [exp]	11.0	0.7811
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	11.0	0.7364
AT2G23390			unknown protein		Lus10010689 [exp]	13.7	0.7863
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	14.5	0.6948
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	15.0	0.7842

Compare expression of checked genes

Lus10030161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.