Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01570 885 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 214 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 188 / 2e-49 PGR3 proton gradient regulation 3 (.1) AT1G63330 178 / 1e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 176 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 177 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 175 / 3e-46 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 174 / 5e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 173 / 3e-45 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G62910 171 / 6e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007863 [exp] 1534 / 0 AT4G01570 887 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 211 / 5e-57 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 208 / 2e-56 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 188 / 1e-49 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 187 / 2e-49 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 181 / 2e-47 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 173 / 6e-45 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014247 [exp] 167 / 1e-43 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 166 / 4e-42 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182900 [exp] 1045 / 0 AT4G01570 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G183100 [exp] 1043 / 0 AT4G01570 1023 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 210 / 1e-56 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G014100 [exp] 202 / 2e-54 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 198 / 8e-54 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 192 / 3e-51 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 186 / 1e-49 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 186 / 2e-49 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 184 / 6e-48 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 181 / 2e-47 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030167 pacid=23153153 polypeptide=Lus10030167 locus=Lus10030167.g ID=Lus10030167.BGIv1.0 annot-version=v1.0 ATGGAAAAACTCAGGCGAGCATCAGTTGCCGCCGCCAAACCTGGTGCTCCACTGAAACAAATGGGCGACCTCCTGCTCGTCGCCTTCCTAACGAAAACCC TATCAGAATCCGGAACCCGAAACCTCGACCCGGAGACGCTCCCTCCCTTGTCGGAGCATCTGGTGATTCAAATCCTAAGGAGGACCCGCCTCGACGTCTC GAGGAAGACCGAGTTCTTCAAATGGTGCTCTCTCAGGCATAACTACAAACACTCAGCGTGCACTTACTCCCAGATGTTCGGCGCCCTCTGCCGCGCCGAG TACCTCGAAGACGTCCCTGATTTGCTCCGACTCATGAAGTCCGACGCCGTATTAGTCGGCCCGGAGACTTTCAAGATGCTGCTCGACGCGCTGATCCGGC TAGGGAAGCTGGATTACGCGATCCAGATACTCGACTACATGGAAGAACTCGAAGCCAAACTCAGCCCACTGATATACGACAGCGTTATCGCCGCACTCGC CAAGAAGAACCAGGTCGATCTGGCGCTCAACATCTTCTTCAAGCTGCTGGATGATCCAAATCCCGCCAGTACTCCACCTGGTTCCGCCGCCTGCAATTCC TTGCTGGTCGCTCTGAAAAAGGCAGACAGGAAGGAAGATTTCACAAAGGTATTTAAAAAACTAAGGCAAATTAGTGGATTTGAATTGAATATATATGGTT ACAACATCTGCATACATGGATTCGGAATGTGGGGAGATTTGCCAACTTCTTTGAATCTCTTCAGAGAAATGCAGGAAAAGGATTTGTGCACATACAACAG CTTGATTCAGTCGTTGTGCTTGGCTGGTAAAGTGAAAGATGCACTGATCGTATACGAAGAACTGAAGGCGTCCGGGCATCGCCCCGACGCCTTCACTTAC CGGATACTAATCCAAGGCTGCTCGAAATCGAGCCAGATCAACGAGTCAACTCACCTTTTCAGTGAAATGCAGTACGAAGGATTCGTAGCTGAATCCGTAG TGTACAACTCTCTTCTCGACGGGATGTTCAAGGCGAACAGAGTTGTAGAAGCGTGCCAGCTGTTCGAAAAGATGGTGGACGACGATGGAGTGAGAGCTAC GCCGTGGACGTATAATATTCTGATCCATGGGCTGTTCCGGAACGGAAGAGGTGAAGCTGGTTATAACTTATTCATTGACCTGAAGAAAAAGGGGCAGCTG GTTGATGGTGTTACTTACAGCATTGTGGCGTTGCAGCTTGTTAAGGAAGGCGAGCTCGAGGAAGCGCTTCGGTTAGTGGAAGAGATGGAGGATAAAGGAA TCGCCGTCGATCTGGTGACGATAACTTCGTTGCTGATCGGATTGTACAGACAAGGGAGATGGGATTGGACTGAACGGCTGATGAAGCATGTAAGAGACGG TAATTTAGTACCGAGTGTGATTAAATGGAAGGCGGAAATGGATGCCGAATTGAAGAACAGGAAGAACAGAGTCAAAGAGGATGGCTCACCTTTGTTCCCT TACAAAGGCGGCATCGAGGAGTACTTGCGTGTTGAATCGAACGGTCGTCGAAAAAGTTCGACGAACGATGATCAGTGGTCGATGTCTCCTCATATGGATC GTCTGGCGGAGGAAGCGAAATCGGGGGCGTTCGCTTCGCAGCTCTTTTCGCTGGCTAGAGGACAGAGAGTAGAGAGGGATTTCGATTTCGAAGTTGCGAT GGTGAATACTTTCATGTCGATCTTCCTGGCGAAAGGGGAGCTGAGCGTGGCGTGCAAGCTGTTCGAAGTATTCAGCAATGCCGGAACGAAGAACCCTGCA AGCTACACGTACAATGCTGTGATGAGTTCGTTCGTGAAGAAGGGATACTTCGACGAGGCGTGGAATGTGCTGAACGAGATGAAGCTTTGTAGTCCTGCAG ATATAGCAACGTACAATGTTATAATCCAAGGGTTAGGGAAAATGGGGAGAGCGGATATTGCGAGTTCTGTTCTTGATAAGTTGATGGATCATGGTGGATG CCTTGATATAGTTATGTACAACACCTTGATCAATGCGCTGGGGAAGGCTGGCCGGATCGAAGAAGCTAATAAGCTTTTCGAGCAGATGAAATGCAGTGGG ATAAATCCTGATGTTGTTACTTACAACACGCTGATAGAAGTTCATACCAGGGCTGGTAGATTGAAAGAAGCTCACAAGTTGCTGAAGATGATGCTTGATG CTGGATGCTTGCCGGATAGCGTTACTGACACGATTCTGGACGTCTTGGCTAGAGAAATCGAGAAAGTTCGATACCAGAAGGCCTCGATCATTAGCCAGAA CAATGATTCTCCTCCCTCTACTTCTTCCTGA
AA sequence Show only first row Show all	>Lus10030167 pacid=23153153 polypeptide=Lus10030167 locus=Lus10030167.g ID=Lus10030167.BGIv1.0 annot-version=v1.0 MEKLRRASVAAAKPGAPLKQMGDLLLVAFLTKTLSESGTRNLDPETLPPLSEHLVIQILRRTRLDVSRKTEFFKWCSLRHNYKHSACTYSQMFGALCRAE YLEDVPDLLRLMKSDAVLVGPETFKMLLDALIRLGKLDYAIQILDYMEELEAKLSPLIYDSVIAALAKKNQVDLALNIFFKLLDDPNPASTPPGSAACNS LLVALKKADRKEDFTKVFKKLRQISGFELNIYGYNICIHGFGMWGDLPTSLNLFREMQEKDLCTYNSLIQSLCLAGKVKDALIVYEELKASGHRPDAFTY RILIQGCSKSSQINESTHLFSEMQYEGFVAESVVYNSLLDGMFKANRVVEACQLFEKMVDDDGVRATPWTYNILIHGLFRNGRGEAGYNLFIDLKKKGQL VDGVTYSIVALQLVKEGELEEALRLVEEMEDKGIAVDLVTITSLLIGLYRQGRWDWTERLMKHVRDGNLVPSVIKWKAEMDAELKNRKNRVKEDGSPLFP YKGGIEEYLRVESNGRRKSSTNDDQWSMSPHMDRLAEEAKSGAFASQLFSLARGQRVERDFDFEVAMVNTFMSIFLAKGELSVACKLFEVFSNAGTKNPA SYTYNAVMSSFVKKGYFDEAWNVLNEMKLCSPADIATYNVIIQGLGKMGRADIASSVLDKLMDHGGCLDIVMYNTLINALGKAGRIEEANKLFEQMKCSG INPDVVTYNTLIEVHTRAGRLKEAHKLLKMMLDAGCLPDSVTDTILDVLAREIEKVRYQKASIISQNNDSPPSTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10030167 [exp]	0	1
AT4G01570			Tetratricopeptide repeat (TPR)...		Lus10007863 [exp]	1.0	0.8892
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	7.9	0.8763
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	7.9	0.8843
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	9.6	0.8677
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	15.6	0.8460
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	19.6	0.8612
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10003660 [exp]	23.2	0.7581
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	24.5	0.8534
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10032103 [exp]	24.6	0.8492
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	28.1	0.8600

Compare expression of checked genes

Lus10030167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.