Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30340 346 / 5e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 313 / 4e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01450 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G01070 259 / 5e-84 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G01430 246 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 245 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G11450 214 / 2e-67 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 216 / 4e-67 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 206 / 2e-63 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 196 / 2e-59 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007862 [exp] 638 / 0 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030169 [exp] 300 / 2e-101 AT3G30340 211 / 5e-67 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 221 / 3e-68 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 211 / 4e-65 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 211 / 1e-64 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008708 [exp] 197 / 2e-59 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 197 / 2e-59 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 193 / 5e-58 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 191 / 4e-57 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182700 [exp] 410 / 4e-143 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 399 / 1e-138 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 372 / 3e-128 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 367 / 3e-126 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 222 / 3e-69 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 216 / 1e-66 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G006600 [exp] 211 / 3e-65 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 204 / 1e-62 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 204 / 2e-62 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 198 / 6e-60 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10030168 pacid=23153125 polypeptide=Lus10030168 locus=Lus10030168.g ID=Lus10030168.BGIv1.0 annot-version=v1.0 ATGGCGTTTGCAGATGAATGGAAGATTATAGCTACGATGATACTCGTTAACTTCAGCTTTGCTTTGGTGAATGTGCTCTTCAAAAAGGCTCTTGATGAAG GAACAAATGAGATGGTTATTGTTGCTTACAGGCTGGCAGTCGCCACCATTTTCTTGACTCCAATTGCCTACTACCGGGAAAGGAAAAGCAGAACCAAGCT CACTGGAACTGTGTTATGCTATCTTTTCGTTGGAGCTCTCACCGGGCTTACCCTCTGCCAATACTTGTTCCTTCTGGGACTAAAGCACACATCTGCTGCC TTCTCATGTGCATTTCTCAACACTGTGCCTGTCTTTACATTCCTACTAGCAATACCATTCGCACTCGAAAAAGTGGACCTGGGGAGCAAGAGCGGGAGAG CCAAAGTGTTAGGAGCAGTGATATGCATGAGTGGAGCTATACTGCTAACCGTCTACAAAGGAACTCCTCTAACAAACTCCCATGGCAGCACATTCCTTTC CAACTCTCCAGTTTCCGATGAGAAAACAAGGAAATGGGTCTTAGGTTCCATACTTCTTATCGGAGGCTGCCTTTCTTGGTCATCTTGGTTCCTCATACAG GCGCAGGTTCTGAAGAGATACCCATGTCCTTACTCTAGCACCGCAATCATCGCATTCTTTGCTTCGGTCCAGACAGCGGTCCTGAGCTTAATCATTAAGA GAGACGCTTCCATGTGGATCCTGAAGGGGAAGTGGGAGATTCTCACAATAGTATACTCTGGAGTGGTGGGATCGGGTATATGCTACGTCGGCATGTCGTG GTGCGTCAAACGAAAAGGTCCAGTGTTCACCGCTGCATTCACTCCCTTTACTCAGATTTTTGCAGCTGTGTTCGACTTCTCGTTCTTGCATGAACAACTC TTTCTTGGAAGTATAATCGGATCGGTCTTCGTGATACTTGGTCTCTACATTCTTCTGTGGGGGAAGAGCAAGGAGGCAGCTGAGAAATGTGTGATAATGA AGCAGCAAATTGAGGGTATTGCTATGAAGGAAGTTGTTGAAGTTCATGATGATGACCCTGAAGTTCAAGTTGTGAAACCAGCTACTGCTGAAACCGACAC ACACTAG
AA sequence Show only first row Show all	>Lus10030168 pacid=23153125 polypeptide=Lus10030168 locus=Lus10030168.g ID=Lus10030168.BGIv1.0 annot-version=v1.0 MAFADEWKIIATMILVNFSFALVNVLFKKALDEGTNEMVIVAYRLAVATIFLTPIAYYRERKSRTKLTGTVLCYLFVGALTGLTLCQYLFLLGLKHTSAA FSCAFLNTVPVFTFLLAIPFALEKVDLGSKSGRAKVLGAVICMSGAILLTVYKGTPLTNSHGSTFLSNSPVSDEKTRKWVLGSILLIGGCLSWSSWFLIQ AQVLKRYPCPYSSTAIIAFFASVQTAVLSLIIKRDASMWILKGKWEILTIVYSGVVGSGICYVGMSWCVKRKGPVFTAAFTPFTQIFAAVFDFSFLHEQL FLGSIIGSVFVILGLYILLWGKSKEAAEKCVIMKQQIEGIAMKEVVEVHDDDPEVQVVKPATAETDTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	0	1
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	2.2	0.7705
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	6.6	0.7235
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10037227 [exp]	8.4	0.6603
AT2G29620			unknown protein		Lus10001202 [exp]	11.4	0.5780
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	14.5	0.6483
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10042476 [exp]	16.8	0.5609
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	18.3	0.6448
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	18.5	0.6774
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	21.7	0.6825
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	21.8	0.6946

Compare expression of checked genes

Lus10030168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.