Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30340 211 / 3e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 194 / 2e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01450 186 / 2e-57 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G01070 178 / 2e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 160 / 1e-47 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01430 158 / 1e-46 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 156 / 1e-45 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 148 / 1e-42 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 142 / 1e-40 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G09380 142 / 2e-40 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030168 [exp] 340 / 2e-117 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 336 / 8e-116 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 154 / 4e-45 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 152 / 7e-44 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10022187 [exp] 140 / 1e-39 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 140 / 4e-39 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028351 [exp] 136 / 6e-39 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024301 [exp] 139 / 1e-38 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10035693 [exp] 135 / 1e-37 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G182700 [exp] 255 / 2e-84 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 249 / 4e-82 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 226 / 6e-73 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 221 / 6e-71 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 160 / 4e-47 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G006600 [exp] 157 / 3e-46 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 157 / 3e-46 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G029100 [exp] 154 / 8e-45 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G040200 [exp] 149 / 5e-43 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 141 / 5e-40 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10030169 pacid=23152988 polypeptide=Lus10030169 locus=Lus10030169.g ID=Lus10030169.BGIv1.0 annot-version=v1.0 ATGAAGATTGCAGGTACGATGATAGTCATTAACTTTGGCTATGCATTGGTGACTGTGCTCTTCAAAAAGGCTCTTGATGAAGGAGCCAATCAGATGGCTA TTGTTGCTTATAGACTTGCAGTCTGCACCATTTTCTTGACTCCAATTGCCTACTTCCGGGAAAGGAACACCAGAACCAAGCTCACTGCAACTCTGTTATG CTATCTTTTCTTTGGAGCTCTCATCGGGATTACCCTTGGCCAATACTTGTTCCTTCTGGGACTAGAGTACACATCTGCTGCCTTCTCATGTGCATTCCTC AACACTGTGCCAGTGAATACATTTTTGCTCGCAATACCGTTCGGTCTCGAAAAAGTGAAGCTGGGGAGGAAGAGCGGAAGAGCCAAAGTGTTGGGAGCAG TGATTTGCATGGCTGGAGCCGTACTACTAACTCTCTACAAAGGATCTCATCTAAATAACTCCCATGATAATGGCCACGGCACAACAGCATTCGCTCCAGC CAGCTCCGAGGATCAGAGAACGATGACGAAATGGGTGGTGGGTTCCTTACTTCTGATCGGAGGCTGCCTCTCTTGGTCATCTTGGTTTCTCATACAGGCA CAGATTCTGAAGAGATACCCGTGTCCATACTCTATCACCCTGTTCCTCTCATCTTTCGCTGCGGTCCAGACCGCGTCCCTGACCTTGATCGTGATGAAGC GGGACGACGCTGCTTCCTTGTAG
AA sequence Show only first row Show all	>Lus10030169 pacid=23152988 polypeptide=Lus10030169 locus=Lus10030169.g ID=Lus10030169.BGIv1.0 annot-version=v1.0 MKIAGTMIVINFGYALVTVLFKKALDEGANQMAIVAYRLAVCTIFLTPIAYFRERNTRTKLTATLLCYLFFGALIGITLGQYLFLLGLEYTSAAFSCAFL NTVPVNTFLLAIPFGLEKVKLGRKSGRAKVLGAVICMAGAVLLTLYKGSHLNNSHDNGHGTTAFAPASSEDQRTMTKWVVGSLLLIGGCLSWSSWFLIQA QILKRYPCPYSITLFLSSFAAVQTASLTLIVMKRDDAASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030169 [exp]	0	1
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	14.3	0.8501
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	17.6	0.8396
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	22.4	0.8346
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	24.7	0.8233
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	31.4	0.8346
AT4G22740			glycine-rich protein (.1.2)		Lus10024563 [exp]	33.4	0.8342
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	38.2	0.8321
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	41.0	0.7953
AT5G26990			Drought-responsive family prot...		Lus10013990 [exp]	42.1	0.8296
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10004483 [exp]	54.8	0.8007

Compare expression of checked genes

Lus10030169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.