Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35035 306 / 1e-104 URED urease accessory protein D (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007861 [exp] 422 / 5e-150 AT2G35035 392 / 6e-138 urease accessory protein D (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159600 [exp] 328 / 5e-113 AT2G35035 406 / 6e-144 urease accessory protein D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01774 [flax] [poplar] UreD UreD urease accessory protein
Representative CDS sequence Show only first row Show all	>Lus10030170 pacid=23153056 polypeptide=Lus10030170 locus=Lus10030170.g ID=Lus10030170.BGIv1.0 annot-version=v1.0 ATGACCGAAACAAGGAAAGTGACGGTGGAAAGAGTCGGAGAGAAATCAACAGTGATAAGATGCTTCTCAAAATATCCTCTCAAATTCATCCTTCCTAATA AGGTGGGCGCCTCAGGAGTTGATGCCGTTTGGGTTTACACACTCACCTACGGCGGCGGTATTGTTTCTGGTGACCGTATATCGTGTGAATTTAATATTGG CAATGGCTGCACTGCTGTGTTAACAACTCAAGCATCCACCAAGGTTTACAAGTCTCTGGGGTCTAGATGTTCTGAGCAGTTCCTGGAGATATGCTCAGAA ACAAGTGTTCCGAGTCATTGCGGATCTAGCTTAGTACTTGTGGATTGGATTACAAGTGGGCGACATGAGAGCGAGGAGAAGTGGGAATTTGATCTGTATA AGAGCACTAACCAGGTATTCCTTGCGTCTGATGATGATGATGATGATGTCAGGCCCTTGTTCATTGACTCTGTATTGCTTGAAAAAGGAAGCATCTCAAG TGTTGCAGAGTGCATGCTGGATTACCAAGTGATTGCAATGGTGGTACTATTGGGGCCTAAGTTGGAGAACATTAAAAAGCAAGTCCAAGAGAATGTAAGA AGGTTGATGTCCTATCAATTGCACAAGCCTTTTTACGGCCATGCTAACCCGAATTCCGGCAGCAGCGGTGACGGATTCAACAATCTGCCATTCGTTGCTT CTTGCAGCCCGTTCGGTCCCAAGGGTGTGGGAGTTGTAGTGAGAATAGCAGCCACCACAACTGAATCCGTATACAAATTTCTGAACCGCCAACTCAGTGC CAACTCAGTGGATTGGAGTCGCTCATCGGCGTTCCACCGTATCGCTGACGTGAAAACTCGGTATTGA
AA sequence Show only first row Show all	>Lus10030170 pacid=23153056 polypeptide=Lus10030170 locus=Lus10030170.g ID=Lus10030170.BGIv1.0 annot-version=v1.0 MTETRKVTVERVGEKSTVIRCFSKYPLKFILPNKVGASGVDAVWVYTLTYGGGIVSGDRISCEFNIGNGCTAVLTTQASTKVYKSLGSRCSEQFLEICSE TSVPSHCGSSLVLVDWITSGRHESEEKWEFDLYKSTNQVFLASDDDDDDVRPLFIDSVLLEKGSISSVAECMLDYQVIAMVVLLGPKLENIKKQVQENVR RLMSYQLHKPFYGHANPNSGSSGDGFNNLPFVASCSPFGPKGVGVVVRIAATTTESVYKFLNRQLSANSVDWSRSSAFHRIADVKTRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	1.0	0.9250
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	3.2	0.9116
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	6.5	0.8738
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	6.7	0.8961
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	6.9	0.8997
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	7.2	0.9056
					Lus10005797 [exp]	7.3	0.8851
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	7.4	0.8999
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	8.1	0.8828
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	8.2	0.8867

Compare expression of checked genes

Lus10030170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.