Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41610 257 / 2e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108300 [exp] 323 / 1e-110 AT2G41610 287 / 2e-96 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030172 pacid=23153146 polypeptide=Lus10030172 locus=Lus10030172.g ID=Lus10030172.BGIv1.0 annot-version=v1.0 ATGGATGTCGAAAGGCTGCTTCAGTTCCAGAATCCAGCTGGGTTTCAGCCGGAATGGGGATACGACGACGTTCAGCTCACATTCTTCAAGTGCACCAAAT GGCAGGTGGAACAAACACTTGACCCTTCTTCATGTCCTTACCATTACTTCTGTGATAGCAACTACCCGGGGAGCTACCCGGCCTACGTGGACGTTCTGTT CTTGCTCGTTGTTGCGTCTGCCTATCTGGTGACCCTCGTCGTCATGCTGATGGAGGTGGTGGCGTCATCGAGAACAGGGACCGGCAACAATGAGGTTTGT CGGTCGAAGAGGTATATACTACCGTCCGGTCCTGTATTCCTCCCTTTGATCCTCCTAGCGTTCGCCAAGGGTTACAGGATCCACAGCGTGTTCCCTGTCT CAAGCGTCGGCCCCGCTATCTTCCTCCTGCTCTTAGTCTCTTCCCTCACATTTGACACCGGGATCGACAGGGACGCGAGGTACGCCTTCTTCGAGGCATC TACTGTGTCGGGGATCCTGCACGCGAGTCTGTACCTAGACTCCGTCGTGATGCCTTACTACACGGGGTTCGATGCGCTGGTTTCTTCAGCCTTCTCCGGC GAGTGCCACTCTTGCATATGTAGGAACGAACCGCTCGTCGTCGGCGGAAAGTTGGTCGGGTACATGGCGTGGTCACCGACGACTTTCCTCGTGGCCGGAG CATTGTGTTGCAGGATCGCCTGCAGAGTTCAGGGAAAGGGTGGCAAGAGCAGAACCACGGCGGTGAAGAGGCTGGTGGAGAGGTTGAGCTGGGTGATGAT CGCCAAGGACTGCATTTACCTGGCGGTTAAGAGTCCGCCGGAGATTTCGAATTTACCGTCTTTGGGAATCGGAGGAGTAATTTTACTGGTGTGTCTTCAT GTTGTAAAGAAGGCCGCTTCTATGATCATGAAGTGGCATCCAGTACAAACACAATTGCAGGAGTAA
AA sequence Show only first row Show all	>Lus10030172 pacid=23153146 polypeptide=Lus10030172 locus=Lus10030172.g ID=Lus10030172.BGIv1.0 annot-version=v1.0 MDVERLLQFQNPAGFQPEWGYDDVQLTFFKCTKWQVEQTLDPSSCPYHYFCDSNYPGSYPAYVDVLFLLVVASAYLVTLVVMLMEVVASSRTGTGNNEVC RSKRYILPSGPVFLPLILLAFAKGYRIHSVFPVSSVGPAIFLLLLVSSLTFDTGIDRDARYAFFEASTVSGILHASLYLDSVVMPYYTGFDALVSSAFSG ECHSCICRNEPLVVGGKLVGYMAWSPTTFLVAGALCCRIACRVQGKGGKSRTTAVKRLVERLSWVMIAKDCIYLAVKSPPEISNLPSLGIGGVILLVCLH VVKKAASMIMKWHPVQTQLQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41610			unknown protein		Lus10030172 [exp]	0	1
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	1.0	0.9908
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	2.0	0.9812
AT3G51325			RING/U-box superfamily protein...		Lus10040617 [exp]	3.5	0.9811
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	4.5	0.9799
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	4.5	0.9760
AT3G52480			unknown protein		Lus10029407 [exp]	5.0	0.9665
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008229 [exp]	5.8	0.9709
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	5.9	0.9788
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	6.0	0.9811
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	6.5	0.9728

Compare expression of checked genes

Lus10030172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.