Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02270 565 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT5G54130 558 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT3G18500 70 / 1e-12 DNAse I-like superfamily protein (.1.2.3) AT1G73875 60 / 2e-09 DNAse I-like superfamily protein (.1) AT5G11350 49 / 5e-06 DNAse I-like superfamily protein (.1) AT3G58560 44 / 0.0003 DNAse I-like superfamily protein (.1) AT3G20410 42 / 0.0007 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G50700 42 / 0.0007 CPK33 calcium-dependent protein kinase 33 (.1) AT1G61950 42 / 0.001 CPK19 calcium-dependent protein kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005145 [exp] 965 / 0 AT1G02270 572 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10010095 [exp] 754 / 0 AT1G02270 570 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10014775 [exp] 57 / 2e-08 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10036357 [exp] 56 / 4e-08 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10008086 [exp] 54 / 2e-07 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 54 / 3e-07 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 51 / 2e-06 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10040071 [exp] 44 / 0.0003 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10027701 [exp] 43 / 0.0004 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108200 [exp] 627 / 0 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 600 / 0 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 577 / 0 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 566 / 0 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.018G032300 [exp] 50 / 4e-06 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 49 / 5e-06 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.012G071700 [exp] 45 / 0.0001 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 45 / 0.0001 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.T012800 [exp] 44 / 0.0003 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10030173 pacid=23153158 polypeptide=Lus10030173 locus=Lus10030173.g ID=Lus10030173.BGIv1.0 annot-version=v1.0 ATGGTACGTGGAATCTCTGGTAATTTCCTCTTCAAATTCGGAGCGATTGCTTCTGTGATGGCAGCCTTCGCATTTCTGCCGTTTGTGAACGAAATTGATC GGCTGGGTGATGCCGTTGGTTTGGAACAGGTGGCTGTGGTGGAGAATGATCCGAATATCCTACACGGAGCGTCCGTTCCTAGACCGCCGCCGGGAGACGA TACTGCGTGCACAACAACTACGGAAGCTACGGCAATGGCAGAGGAACCGTGCCACATTTCGTGCACTACTTTCAACATCCTCGCTCCTATCTACAAGCGC CTAGATAATAAGAACCAAAACGCTCGTGAGAGCGATTTCAAATCCTTCTGGCTTTCGCGGAACCAGATGATTTTGGAGTGGTTGCTCATGGAGAGAACCT CCATCATTTCCCTCCAGGAATTCTGGACTGGAAATGAAGATTTTGTGCATATGTACGAGGACAAGCTCTGTGATGCTGGCTATTTCACCTTTCAACTTGC CCGAACGAACAACCGAGGAGATGGCTTGTTAATGGCAGTGCATAAGGAGTTCTTTAGGATTATAAACTATAGGGAGTTGCTCTTTAATGATTTCGGTGAC CGTGTCGCCCAGCTATTACACGTTCATTTGATATTGCCCACGTCATGTCATCGGAAAAGTGACACTCGACAAGAGCTTCTCATCGTGAATACGCATTTGT TATCCCCTCATAATCCCAGCCTGTCCATTGCACGGCTGCATCAGGTCCACCAAATATTACAATATGTAGAGACATATCAGCGAGAAAACAAACTCGGAAA CATTCCTGTCATTCTATCCGGTGATTGGAATGGAAGCAAACGCGGGCGTGTCTATAAATTCCTTCGTTCTCAAGGGTTTGTATCGTCATATGACATTGCT CATAAGTACACAGACAGTGATGCTGATGCTCACAGATGGGTGAGTCACCGAAACCATAGGGGTAACATCTGTGGCGTTGATTTCATATGGCTCCGTAATC CTAATGATGAACCAAGGAAACCATTGAAGACAAGTTGGGCCGAAGCAGCATTTGGTATAATAAAGTATCAGCTCCAAAAGGCTTCATTGAAAGAGAGTGA TGCCTTTGCATTTCTGAAGGCTGATAACTCTGGCGATTTCATAACATACTCAACTCTATGCGAAGGCCTTCGGCAGGTTCACCTGAGTGGTCATCCTTAC GGACTGAGTTTCCAGGAGACGAAAGACCTATGGAACCAAGCAGACATCGACGGGAATGGAGTCATCGATTCCGAAGAGTTTAAGAGGATATGGAACACAT CGTGCTGTTCGGTACAACGGGACGAGAACTCCAGAGAAAATGGTGAAGAAATGATGGGTCTGATTGTGAAGGATGCAGTTCTGTTTCCAAGAGAAGTGGA GAGGGGATTGTGGCCGGAGAACTACTCTCTTTCCGATCACGCTCGACTCACCGTCATATTTTCTCCGGTGAGGTTGCGGTTCAAGGAGGAGAAAGTAGTT TTATAA
AA sequence Show only first row Show all	>Lus10030173 pacid=23153158 polypeptide=Lus10030173 locus=Lus10030173.g ID=Lus10030173.BGIv1.0 annot-version=v1.0 MVRGISGNFLFKFGAIASVMAAFAFLPFVNEIDRLGDAVGLEQVAVVENDPNILHGASVPRPPPGDDTACTTTTEATAMAEEPCHISCTTFNILAPIYKR LDNKNQNARESDFKSFWLSRNQMILEWLLMERTSIISLQEFWTGNEDFVHMYEDKLCDAGYFTFQLARTNNRGDGLLMAVHKEFFRIINYRELLFNDFGD RVAQLLHVHLILPTSCHRKSDTRQELLIVNTHLLSPHNPSLSIARLHQVHQILQYVETYQRENKLGNIPVILSGDWNGSKRGRVYKFLRSQGFVSSYDIA HKYTDSDADAHRWVSHRNHRGNICGVDFIWLRNPNDEPRKPLKTSWAEAAFGIIKYQLQKASLKESDAFAFLKADNSGDFITYSTLCEGLRQVHLSGHPY GLSFQETKDLWNQADIDGNGVIDSEEFKRIWNTSCCSVQRDENSRENGEEMMGLIVKDAVLFPREVERGLWPENYSLSDHARLTVIFSPVRLRFKEEKVV L

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	0	1
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	1.7	0.8075
					Lus10021794 [exp]	2.0	0.8014
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	8.9	0.7655
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	10.2	0.7646
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	14.0	0.7344
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	14.0	0.7696
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	14.4	0.6883
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	26.4	0.7634
					Lus10019251 [exp]	34.1	0.6841
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	35.3	0.6951

Compare expression of checked genes

Lus10030173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.