Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 146 / 1e-37 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 144 / 3e-36 NAC ANAC014 NAC 014 (.1.2) AT5G24590 137 / 1e-34 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT4G01550 134 / 7e-34 NAC ANAC069, NTM2 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) AT1G02230 128 / 3e-32 NAC ANAC004 NAC domain containing protein 4 (.1) AT3G49530 130 / 4e-32 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G39820 127 / 4e-32 NAC ANAC094 NAC domain containing protein 94 (.1) AT5G17260 129 / 5e-32 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 127 / 4e-31 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G17730 121 / 6e-31 NAC ANAC057 NAC domain containing protein 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005143 [exp] 628 / 0 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10030174 [exp] 149 / 1e-40 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 151 / 7e-39 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10005144 [exp] 139 / 3e-37 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 142 / 7e-36 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 141 / 1e-35 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10015367 [exp] 127 / 6e-32 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10015587 [exp] 128 / 3e-31 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10007263 [exp] 125 / 3e-31 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181800 [exp] 184 / 5e-51 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Potri.014G107500 [exp] 180 / 5e-50 AT4G35580 143 / 3e-37 NAC transcription factor-like 9 (.1.2.3) Potri.002G182000 [exp] 145 / 2e-39 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.002G182400 [exp] 150 / 6e-39 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 140 / 3e-38 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.002G154200 [exp] 140 / 4e-38 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 140 / 7e-38 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G108000 [exp] 140 / 1e-37 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.014G108100 [exp] 142 / 2e-37 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.002G182300 [exp] 137 / 9e-37 AT4G35580 184 / 4e-55 NAC transcription factor-like 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10030175 pacid=23153123 polypeptide=Lus10030175 locus=Lus10030175.g ID=Lus10030175.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGTCAGTAGGTTACAGGTTCCACCCAACAGACGAAGAGCTCATCGCCCATTACCTGAAGCTGAAGATGAACGGCCACGGTTCCCTCGTCG ACAAAGTCATCCCTGAAGTCGACGTTTACCGCTTGGAGCCTTCCGACTTGCCCAATTATACGGTGGTGGAATCTTCGTCGGACGATCAAGTGTGGTATTT CTACTGCCGGCTTGATTACAAGTTCAAGAACAGCAAGAGGGCTAACAGGGCGACGGAGAGCGGGTTCTGGAAAGTCACCGGAAAGCCTAGGTTCATCGTG GCTAGAGACTCCGGCGAGCAGATTGGAGAGAAGAAGACTTTGGTTTTCTTCTACAGAGCCCGCGGCGGCGATGCTAAGCCGGTCAGTACCGATTGGGTGA TCCACCAATACCAGGCCACTACCCTGCTTCCTGATCAGACAGAATATGTGATCTGCAAACTGAAGAACAAGGGAGATTGTTGGACCAAGAATTCGGCTGC TAGGACTAGTGGTGAACCGAGTCACTCCACATCAACAGCTTCTGATGCTGGAAACCATGGTGCATCAATCCAAGTGGGAGATTCAGATACTGTAGTCGTC GGGAACAGTCCTTCGACGATCCAACCACGGTTGTTCATCAAGGAAGGTCTTTCCCTTGATGATTTCTTGCAAGGTGATGATGACTTGTTCTTCAATCAAC CCGATAACGGACCATCAACTTTGCTGCGATTCAACTTTGATGAGGAGGAGGAAGTGGATCCAGACTCGTATCTTCTTATCCCAGATGACTACCTCAGTAA TGAAACTGCATATGCTCACCCTAATGACTACAGACCGGAAAAGGCGTTGAGCACATATCATGTTGAGGGCGACGTGAAAGAGTTCAACGTGATAACATCA GAAGTTCCTGAGATGTACCAACTTTTCGCTGGCATACCTCAATCAAAATCTACTCCTAGAAACAATCAGCATCAGCTCCAATCTTTAATGGTATCCAAAG ATAAGGGAGATTCAGATACTGTAGTCGTCGGGAACAGTCCTTCGACGATCCAACCACGGTTGTTCATCAAGGAAGGTCTTTCCCTTGATGATTTCTTGCA AGGTGATGATGACTTGTTCTTCAATCAACCCGATAACGGACCATCAACTTTGCTGCGATTCAACTTTGATGAGGAGGAGGAAGTGGATCCAGACTCGTAT CTTCTTATCCCAGATGACTACCTCAGTAATGAAACTGCATATGCTCACCCTAATGACTACAGACCGGAAAAGGCGTTGAGCACATATCATGTTGAGGGCG ACGTGAAAGAGGTCAACGTGATAACATCAGAAGTTCCTGAGATGTACCAACTTTTCGCTGGCATACCTCAATCAAAATCTACTCCTAGAAACAATCAGCA TCAGCTCCAATCTTTAATGGTATCCAAAGATAAGTTTGCGATAAATGGTTCCATTTTGCAGGCTGAGGAGGGAACAAGAGAATCACTCACTGGAGGCAAG AAGGATTTACCACTGGGAGGAGCTGGCGGGATGGAAATACCACTGATCGGAGCAGAAAGACCGATAGCTTGTCAAGGAGCTATGAAGGAAATACAACTGG TCAGAGCTGGTGGGATGGAAATACCACGGATCGGAGCACAAAGACCGGTACGGGTTATGAACCTGCAGTCAGTGATGAAGCTAGAGTCCACAGCTCATGA ACCTGGGAAAGGTTGGAAGGTCGGTTCGTTGATAGAAATGGTGGAGGTTCCAGAAAGCCGTATGCAAAGTCCACCAACAGTATACATGACCAACATTCTG GTGGCTCTGCTGGCTTTGGCATTCTTCATCTATGAGCTGCCATTTCTTCGTTGA
AA sequence Show only first row Show all	>Lus10030175 pacid=23153123 polypeptide=Lus10030175 locus=Lus10030175.g ID=Lus10030175.BGIv1.0 annot-version=v1.0 MAAASVGYRFHPTDEELIAHYLKLKMNGHGSLVDKVIPEVDVYRLEPSDLPNYTVVESSSDDQVWYFYCRLDYKFKNSKRANRATESGFWKVTGKPRFIV ARDSGEQIGEKKTLVFFYRARGGDAKPVSTDWVIHQYQATTLLPDQTEYVICKLKNKGDCWTKNSAARTSGEPSHSTSTASDAGNHGASIQVGDSDTVVV GNSPSTIQPRLFIKEGLSLDDFLQGDDDLFFNQPDNGPSTLLRFNFDEEEEVDPDSYLLIPDDYLSNETAYAHPNDYRPEKALSTYHVEGDVKEFNVITS EVPEMYQLFAGIPQSKSTPRNNQHQLQSLMVSKDKGDSDTVVVGNSPSTIQPRLFIKEGLSLDDFLQGDDDLFFNQPDNGPSTLLRFNFDEEEEVDPDSY LLIPDDYLSNETAYAHPNDYRPEKALSTYHVEGDVKEVNVITSEVPEMYQLFAGIPQSKSTPRNNQHQLQSLMVSKDKFAINGSILQAEEGTRESLTGGK KDLPLGGAGGMEIPLIGAERPIACQGAMKEIQLVRAGGMEIPRIGAQRPVRVMNLQSVMKLESTAHEPGKGWKVGSLIEMVEVPESRMQSPPTVYMTNIL VALLALAFFIYELPFLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10030175 [exp]	0	1
AT5G23070			Thymidine kinase (.1)		Lus10016925 [exp]	3.5	0.7814
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	5.1	0.8402
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	14.5	0.7839
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	20.2	0.7917
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	22.0	0.7986
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	27.1	0.7873
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	31.9	0.7731
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	32.8	0.7249
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	36.9	0.7641
AT3G22970			Protein of unknown function (D...		Lus10039397 [exp]	38.7	0.7415

Compare expression of checked genes

Lus10030175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.