Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01040 962 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT5G20320 308 / 1e-87 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 194 / 2e-50 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G43920 160 / 6e-40 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT1G35530 59 / 2e-08 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 52 / 1e-06 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 52 / 1e-06 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G62190 51 / 3e-06 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G31970 50 / 6e-06 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 50 / 1e-05 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005142 [exp] 1156 / 0 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 356 / 5e-104 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019588 [exp] 324 / 9e-95 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10036447 [exp] 311 / 2e-89 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019757 [exp] 198 / 1e-51 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10009444 [exp] 59 / 3e-08 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10035149 [exp] 50 / 5e-07 AT5G14610 218 / 1e-68 DEAD box RNA helicase family protein (.1.2) Lus10002905 [exp] 52 / 1e-06 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10025960 [exp] 52 / 3e-06 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181400 [exp] 1049 / 0 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.018G047500 [exp] 400 / 2e-119 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.010G181400 [exp] 362 / 4e-107 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.008G075900 [exp] 362 / 5e-107 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 182 / 2e-46 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.013G109600 [exp] 65 / 2e-10 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G110200 [exp] 57 / 2e-08 AT1G35530 0 / 1 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.006G253100 [exp] 50 / 6e-06 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 50 / 6e-06 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.015G133400 [exp] 49 / 1e-05 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF03368 [flax] [poplar] Dicer_dimer Dicer dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10030176 pacid=23153026 polypeptide=Lus10030176 locus=Lus10030176.g ID=Lus10030176.BGIv1.0 annot-version=v1.0 ATGGACAGGAAAGAGAGGGATCAGGGTCGGGGAAGAGGTCGGTTTGGTGTTAATGGTGTCAAGAGGGATGGTAGGGAAAGGGAATGGAGGGAGAGGGAAC AGAGGGGTTATTGGGAGAGGGATAGTACCGGATCGAACGGGATGGTTTTTCGGCCTGGTACTTGGGAGTCTGATCATAAGCATGAGGAGAAACTGACTGG TGAGAACAATGGTGTGGAGTCTGCTGAAAAGGTGGAGACGACACCTGAAGAGCCTAAGGAGAAAGTTCCCGAGGAACATGCCAGGAAGTATCAGTTAGAT GTTCTTGAGCAAGCGAAGAAGAGAAACACAATAGCTTTCCTTGAAACCGGGGCTGGGAAGACCCTTATTGCCGTGCTTCTCATGAAAAGCATCTCCAGTG ACTTGGAGAAGAGTAACAAGAAAATGCTTGCTGTGTTTTTGGTTCCGAAAGTACCACTTGTTTATCAGCAAGCAGAGGTTATTCGTGAGCGTACTGGCTT TCAAGTTGGCCATTTCTGTGGCGAGATGGGTCATGACTTCTGGGACACTAGAAGATGGCAGCGTGAGTTTGATACCAAGCAGGTTTTAGTAATGACTGCC CAGATTCTGCTGAACATCCTGAGGCATAGCATAATTAAAATGGAGTCGATAAATCTTCTTATCCTCGATGAATGTCATCATGCTGTGAAGAAGCATCCAT ATTCTCTAGTGATGTCAGAATTCTATCATACAACTGAGAAGGAGAAGAGGCCATCAGTGTTTGGAATGACTGCTTCTCCCGTTAACTTAAAGGGTGTTTC AAGCCAAGTGGACTGTGCAATAAAGATCCGCAATCTTGAGAGTAAACTTGACTCTGTTGTTTGTACAATTGAAGATCGAAAAGAGCTGGAAAAGCATGTC CCCTTCGCGAACTCGGTTGCTCTATCCTTTTTGACTGCTTTGCAAAATGATGAAAGGTCAACCTACCAGCTTGATGTCAAGCTTCAAGAATCCTATCTAG AAAAGGTTGTGTCCCTTCTACAATGCCAAGTGACAGAAGGAGCTGCTACCGAGAAAGACACAAAAGTTGCAGATGAAGATAATGGCATTGCTCAAGATAA TGGCATTGCTCAAGCTGAAGCTGATCCTGAAGAGATTGAGGAGGGAGAGCTCCCAGATGATCACGTTGTGTCTTGTGGAGAGCACTTTGATGTGATAATT GGAGCTGCAGTTGCTGATGGGAAAGTTACCCCAAAAGTCCAGTCATTAATAAAGATACTTCTCAAATACCAGCACACGGAAGACTTCCGTGCAATCATCT TTGTTGAGCGTGTGGTTGCTGCTTTAGTTCTTCCTAAGGTCTTTGCAGAGCTTCCCTCTCTCAGTTTCATCAAAAGTGCTAGCTTGATTGGTCATAACAA TAGTCAAGAGATGCGAACAAGCCAAATGCAGGACACAATTGCTAGATTTCGGGATGGCCGTTTGACATTGTTGGTAGCTACTAGTGTTGCTGAGGAAGGA CTTGATATTAGGCAATGCAATGTTGTCATCCGTTTCGATCTTGCAAAAACTGTTCTGGCGTACATTCAGTCAAGGGGCCGTGCAAGAAAACCTGGTTCAG ATTACATCTTAATGGTTGAAAGGGGAAGCCTATCTCATGCAGCATTTTTAAGGAATGCCAGAAATAGTGAGGAAACTTTGCGGAGAGAAGCAATTGAAAG AACTGACCTTAGTCATCTAAAGGATACTTCAAGGTTAATTTCTGTAGATCCAGTACCAGGAACTATATACCAGGTGGCTTCCACTGGTGCTGTTGTAAGC TTGAATTCGGCTGTCGGGCTTATACATTTCTACTGCTCCAAGCTGCCCAGTGACAGATATTCAATCCTTCGTCCTGAGTTTATCATGGAGAATCACGAAA AACCAGGAGGTCCCATTGAATATTCGTGCAAGCTCCAACTTCCTTGTAATGCTCCATTCGAGAAGCTTGAGGGTCCTGTCTGTAGCTCAATGCGTCTTGC ACATCAGGCATGCTATTCAGACTCAATGTTATTTCTATTATTCCGAATACACTGTAAGGATTTCTTCCTTATCTACCTCACTTCCCAGGCTGTGTGTTTG GCTGGCTGCAAGAAGCTCCACGAGATGGGAGCATTTACTGATATGCTATTGCCAGACAGAGGAAGTAGAGAAGACAAAGAAAAGGAAAATGATGAAAGTG AACCACTTCCTGGAACTGCCAGGCACCGGGAATTCTATCCTGAAGGTGTAGCTGATATTCTTCAGGGTGAATGGATCTTATCAGGAAAAGATTCCTGTAG CGAGTCCAAGGTGTTTCGGCTTTACATGTATGCTGTTTCGTCTGTTAATAGTGGCACTTCAAAAGACCCTTACATTAGTCAAGTTTCCGAATTTGCAGTG CTTTTTGGCAGTGAGCTGGATGCAGAGGTGTTATCGATGACGATGGATCTCTTTATCGCTCGAACCATGACAACAAATGCATCTCTTGTCTTTAAAGGGG CAATTGAAATCAATGAAAGCCAGCTGGCTTCCCTAAAAAACTTTCATGTCAGATTGATGAGTATTGTACTGGATGTGGATGTTGAACCTTCCACTACTCC ATGGGATCCTGCTAAGGCATATTTGTTTGTCCCTGTGGTTGGCGATAAGTCTGTAGATCCGATAGTTGAAATTGATTGGGATCTGGTTAGAGAAATAATA GATTCGGATGCATGGACCAATCCTCTTCAAAGAGCCAGACCAGATGTCTATCTTGGTACGAATGAGAGGACACTGGGGGGTGATAGGAGAGAATATGGAT TTGGAAAATTGCGGCATGGCATTGCTTTTGGACAGAAATCGAAGATTTGGTAG
AA sequence Show only first row Show all	>Lus10030176 pacid=23153026 polypeptide=Lus10030176 locus=Lus10030176.g ID=Lus10030176.BGIv1.0 annot-version=v1.0 MDRKERDQGRGRGRFGVNGVKRDGREREWREREQRGYWERDSTGSNGMVFRPGTWESDHKHEEKLTGENNGVESAEKVETTPEEPKEKVPEEHARKYQLD VLEQAKKRNTIAFLETGAGKTLIAVLLMKSISSDLEKSNKKMLAVFLVPKVPLVYQQAEVIRERTGFQVGHFCGEMGHDFWDTRRWQREFDTKQVLVMTA QILLNILRHSIIKMESINLLILDECHHAVKKHPYSLVMSEFYHTTEKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIEDRKELEKHV PFANSVALSFLTALQNDERSTYQLDVKLQESYLEKVVSLLQCQVTEGAATEKDTKVADEDNGIAQDNGIAQAEADPEEIEEGELPDDHVVSCGEHFDVII GAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFIKSASLIGHNNSQEMRTSQMQDTIARFRDGRLTLLVATSVAEEG LDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGSLSHAAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDPVPGTIYQVASTGAVVS LNSAVGLIHFYCSKLPSDRYSILRPEFIMENHEKPGGPIEYSCKLQLPCNAPFEKLEGPVCSSMRLAHQACYSDSMLFLLFRIHCKDFFLIYLTSQAVCL AGCKKLHEMGAFTDMLLPDRGSREDKEKENDESEPLPGTARHREFYPEGVADILQGEWILSGKDSCSESKVFRLYMYAVSSVNSGTSKDPYISQVSEFAV LFGSELDAEVLSMTMDLFIARTMTTNASLVFKGAIEINESQLASLKNFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVVGDKSVDPIVEIDWDLVREII DSDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGIAFGQKSKIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030176 [exp]	0	1
AT1G03000		PEX6	peroxin 6 (.1)		Lus10040918 [exp]	1.7	0.8957
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	4.9	0.8866
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	7.9	0.8920
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	11.0	0.8654
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	13.0	0.8759
AT2G25730			unknown protein		Lus10007687 [exp]	15.5	0.8785
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	20.2	0.8503
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	22.6	0.8703
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	24.8	0.8786
AT3G13225			WW domain-containing protein (...		Lus10010578 [exp]	26.8	0.8666

Compare expression of checked genes

Lus10030176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.