Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01040 1084 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G43920 382 / 2e-116 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT3G03300 353 / 7e-107 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT5G20320 290 / 1e-83 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G20420 177 / 4e-49 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT4G15417 155 / 1e-42 ATRTL1 RNAse II-like 1 (.1) AT5G45150 125 / 1e-29 RTL3 RNAse THREE-like protein 3 (.1) AT1G80650 42 / 0.0007 RTL1 RNAse THREE-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005141 [exp] 665 / 0 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005142 [exp] 385 / 6e-118 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 386 / 2e-117 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019757 [exp] 341 / 2e-101 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10036447 [exp] 327 / 2e-97 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019587 [exp] 206 / 2e-58 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10000182 [exp] 157 / 3e-43 AT4G15417 230 / 5e-75 RNAse II-like 1 (.1) Lus10015141 [exp] 130 / 4e-34 AT4G15417 197 / 2e-63 RNAse II-like 1 (.1) Lus10040013 [exp] 133 / 1e-33 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181400 [exp] 1152 / 0 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.018G047500 [exp] 390 / 1e-118 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.008G075900 [exp] 339 / 2e-101 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 328 / 1e-97 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 322 / 4e-95 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.002G226700 [exp] 189 / 1e-54 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 189 / 3e-54 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10030177 pacid=23153018 polypeptide=Lus10030177 locus=Lus10030177.g ID=Lus10030177.BGIv1.0 annot-version=v1.0 ATGGTAGTAACAGCTGCTCATTCCGGGAAAAGGTTTTTCGTAGATTCTATACGCTATGATATGACAGCGGAGAATTCATTCCCAAGGAAAGAAGGTTATC TTGGCCCGCTTGAGTACAGCTCATATGCCGAGTATTACAAACAAAAATATGGAGTTGAATTGGTGTACAAATCTCAACCTTTGTTACGAGGTCGTGGTGT TTCATACTGCAAAAATCTCCTCTCCCCTAGGTTTGAACACTCGGAAGCTGGTGATGGTGAAACGGAGGAGGCCCATGATAAAACTTACTACGTATTTCTT CCTCCTGAACTATGCTTAGTCCACCCTCTTCCTGGATCTCTGGTTCGAGGTGCCCAGAGGTTGCCGTCGATAATGAGACGGGTCGAAAGCATGCTCCTCG CTATCCAGCTCAAACATGCAATTAACTATCCAGTCCCTGCTTCAAAGATCTTGGAAGCTTTGACTGCTGCTTCATGCCAAGAGACATTCTGTTACGAGAG AGCAGAGCTTTTGGGAGACGCTTACCTGAAATGGGTTGTCAGTCGGTTTCTTTTTCTCAAGTACCCACAGAAACATGAAGGCCAACTTACTAGAATGAGG CAGCAAATGGTCAGCAACATGGTTCTCTATCAATTTGCACTGAACAAACGCCTTCAATCTTACATCCAAGCCGATCGTTTCGCTCCATCTCGGTGGGCGG CTCCTGGGGTTTTGCCCGTCTTTGATGAAGATACAAACGATGACGAATCTCCATCCTTCTTCGACGAGGAGAGAGCCGGTATGAAGGAAAATCCCGGAGC AGACATCTTTGCAGATGATGAAATGGAGGATGGAGAGCTCGAAGGCGACGACTCTAGCTCTTATCGAGTGCTCTCGAGCAAAACACTGGCAGATGTTGTT GAGGCTCTAATCGGAGTTTATTATGTTGAAGGTGGTAAAAAAGCAGCGAACCATCTCATGAGCTGGATAGGAATCCAGGTAGAGTTTGATTTTGACGAGA CAGATGGAGTAATCCAGTCGACGAGTATACCGGATAGCGTTATGAGAAGTATTGATTTCGAGACTATTGAAGGTGTCTTGAATCACAAATACAGCAAGAA GTCCCTTTTGATAGAGGCCATAACTCATGCTTCGAAACCGTCTCCCGGAGTCTCCTGCTATCAACGGTTGGAGTTTGTTGGCGATGCGGTCTTGGATCAT CTCATTACGAGGCACCTCTTCTTCTCATATACAGATTTACCCCCCGGTAGACTAACGGACTTGCGTGCTGCTGCTGTAAACAACGAAAACTTCGCCCGTG TTGCTGTAAAACGTAAGCTCCATGTCCACCTCCGCCATGGATCGAGTGCACTCGAAAAGCAGATAAGAGAATTCGTGAAGGAGGTTCAGCAAGAAGCTTC GAAGCTGGAGTTCAATTCTTTCGGCTTGGGAGACTGCAAAGCTCCAAAAGTTCTTGGTGACATTGTTGAATCCATTGCTGGCTCTATTTTCCTTGACAGC GGGCTGGACACAGGAGTCGTCTGGAAGGTGTTCCAGCCTTTGTTGGACCCAATGGTGACTCCAGAGACACTCCCAATGCATCCAGTAAGAGAGCTACAAG AGCGATGCCAGCAACAGGCTGAAGGACTGGAATACAAGTCCAGCCGAACGGGAAATGTGGCGACTGTCGAAGTCTTCATCGACGGAGTCCAGGTGGGAGT CGCTCAGAACCCGCAAAAGAAGATGGCACAGAAACTAGCTGCTAGGAATGCACTTGTTGTCCTCAAGGCGAAAGAAACCGCGGCAGCAGCTGCTGAAGCA GCTAATGATGAGAATGGGAAGAAGAAGAAGAACGGAAACCAGACGTTTACGAGACAGACGTTGAACGACATCTGCTTGCGCCGAAACTGGCCGATGCCTT TCTACAGGTGCGTGAGCGAAGGTGGCCCGGCTCACGCGAAGAGGTTCACATTTGCGGTGCGAGTGAACACAAACGACAGAGGCATGACCGATGAATGCAT CGGGGAGCCGATGCCGAGTGTGAAGAAGGCCAAGGACTCCGCTGCAATTCTTCTCCTTGAACTCTTGAACAAACGGGACTCGTCCTGA
AA sequence Show only first row Show all	>Lus10030177 pacid=23153018 polypeptide=Lus10030177 locus=Lus10030177.g ID=Lus10030177.BGIv1.0 annot-version=v1.0 MVVTAAHSGKRFFVDSIRYDMTAENSFPRKEGYLGPLEYSSYAEYYKQKYGVELVYKSQPLLRGRGVSYCKNLLSPRFEHSEAGDGETEEAHDKTYYVFL PPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKHAINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMR QQMVSNMVLYQFALNKRLQSYIQADRFAPSRWAAPGVLPVFDEDTNDDESPSFFDEERAGMKENPGADIFADDEMEDGELEGDDSSSYRVLSSKTLADVV EALIGVYYVEGGKKAANHLMSWIGIQVEFDFDETDGVIQSTSIPDSVMRSIDFETIEGVLNHKYSKKSLLIEAITHASKPSPGVSCYQRLEFVGDAVLDH LITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVAVKRKLHVHLRHGSSALEKQIREFVKEVQQEASKLEFNSFGLGDCKAPKVLGDIVESIAGSIFLDS GLDTGVVWKVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKSSRTGNVATVEVFIDGVQVGVAQNPQKKMAQKLAARNALVVLKAKETAAAAAEA ANDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTNDRGMTDECIGEPMPSVKKAKDSAAILLLELLNKRDSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	0	1
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	1.0	0.8028
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	2.0	0.7762
AT1G15780			unknown protein		Lus10025450 [exp]	2.0	0.7930
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	3.5	0.7810
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	4.9	0.7422
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	5.2	0.7550
AT1G15780			unknown protein		Lus10025452 [exp]	6.5	0.7572
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	7.9	0.6870
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	10.1	0.7614
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	10.2	0.6922

Compare expression of checked genes

Lus10030177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.