Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46850 384 / 1e-127 Protein kinase superfamily protein (.1) AT2G23450 100 / 2e-22 Protein kinase superfamily protein (.1.2) AT5G66790 84 / 5e-17 Protein kinase superfamily protein (.1) AT1G21240 80 / 1e-15 WAK3 wall associated kinase 3 (.1) AT1G56120 73 / 2e-13 Leucine-rich repeat transmembrane protein kinase (.1) AT4G31100 71 / 7e-13 wall-associated kinase, putative (.1) AT1G16120 69 / 5e-12 WAKL1 wall associated kinase-like 1 (.1) AT1G21210 68 / 8e-12 WAK4 wall associated kinase 4 (.1) AT5G02070 67 / 8e-12 Protein kinase family protein (.1) AT1G21270 67 / 9e-12 WAK2 wall-associated kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005138 [exp] 667 / 0 AT2G46850 607 / 0.0 Protein kinase superfamily protein (.1) Lus10032741 [exp] 103 / 3e-23 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 90 / 9e-19 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10004504 [exp] 72 / 5e-13 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10014387 [exp] 71 / 8e-13 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10038077 [exp] 70 / 2e-12 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10008105 [exp] 69 / 3e-12 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10034085 [exp] 69 / 3e-12 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10019114 [exp] 67 / 2e-11 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181100 [exp] 469 / 9e-161 AT2G46850 670 / 0.0 Protein kinase superfamily protein (.1) Potri.005G130900 [exp] 110 / 9e-26 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 109 / 2e-25 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 102 / 8e-23 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 88 / 3e-18 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G148432 [exp] 87 / 5e-18 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.003G185850 [exp] 85 / 2e-17 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.018G148300 [exp] 85 / 3e-17 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148564 [exp] 80 / 1e-15 AT1G79680 505 / 2e-169 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185732 [exp] 79 / 1e-15 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030181 pacid=23153119 polypeptide=Lus10030181 locus=Lus10030181.g ID=Lus10030181.BGIv1.0 annot-version=v1.0 ATGTTTCCGCCATTGTTACTCTGCATCACCTGCTTCTTCACTCTCTTCTTCACACTGTCTAATTCACTCTTCTGCAACGAGACATGCGGAAAACTCCAAC TTCCCTTCCCATTTCACATCAACTCCTCTTGCAGCCCTATTTCACCATCGCCGTTCCACCTCACCTGCACAAACTCTACATCCCTTTCTTTAACAATCGA CTCCAACACCTACAGAGTCCTCCGCTTCTTCTCCGACGGGATCCTCGTCGATTTCCCTTCTCCCTCCTCCTCCTCCGCCGCCGCCACCTGCCGCCAGTAC AACGATCTCAACGCCTTCTCCTTCAGCGGCAACGCCCACTTCGGGATCTCGGCGGAGAACGTAATCGGGCTGTACGACTGCGAGGATTCTTCGCTCTGTA AAGCAGAGTGCGAGGCCGTTGATCTCCCCGGCTGCGACGGGAACATCGACGGTGGTGGTTCGCCGGCTTGCTGCTACCCGCTGTCGGACCATAGCTCGTG GGATTTTGGAGATGGATTCGGTGTTTTTGGTAAGTTTGGATGCAGGGGATTCTCTTGCTGGGTTGTGCCGAGAGGGGAGAATTCCGGGAAGCGTGGGGTT AAGTTGGAATGGGCTCTCTGGGGCAATTCGTCGAACAGGTTGTGTGCGGATGATGCTGATTTTGTTAATGCTACTACTGTGGCGAGTGGGGTGCGGTGTA AGTGTCGAGATGGGTTCGTTGGTGATGGTTATTTCAATGGCACTGGTTGCTTGAAATCTTGCGTTAAGGATGGCCGTGAAGCCCACGGCTACGACTGTTT TGCTAAACGGAGAAGCAGCAAGATGGTCTCCGTTATAGCCGGGGTTTTGGGTCCGATATTCGTGATAGCGTCACTAACGGCGTTACTGTGCCTGCTGAAG CGTCCGGCTAATGGAACGGCGTCTTACGAGCCAAACAGGAAGAGCAAGTCCCACACCACGGTATCCTTCAGGAAGCCATGGACGGCGCGTTCCTTCACTT TCAAGGAGTTGGAGGAAGCCACCAGATGGTTCGAAGACGGCCAGAAACTCACCGGCAGCGGCGGTGGAAGCGGCGGCGGCGGCGGGGAGATATATGCGGG AATTCTCGCTGATGGATCTAAGGTGGCCGTACACAAAGTTGAGTGCAGAGACCAGAGAGATCTCAGCCAGGTGCTCTCGCGAATCGAGGTCCTCTCCTCC GTCTTCCACCGCAACATGGCTCGAATCGTCGGCTGCTGCATCGACTATGGCTACACGCCGCTCGTTGTCTACGAGTTCCCAGGGAACGGAACCCTAGATT CGGCGGCTTCAGGCTCCACATCGGAACCGAGATCGGCGGATCCGGATCCGGAGGATTCGTTCCGAAGAGCGATGTGTATCAGTTCGGCGCGCTGCTGA
AA sequence Show only first row Show all	>Lus10030181 pacid=23153119 polypeptide=Lus10030181 locus=Lus10030181.g ID=Lus10030181.BGIv1.0 annot-version=v1.0 MFPPLLLCITCFFTLFFTLSNSLFCNETCGKLQLPFPFHINSSCSPISPSPFHLTCTNSTSLSLTIDSNTYRVLRFFSDGILVDFPSPSSSSAAATCRQY NDLNAFSFSGNAHFGISAENVIGLYDCEDSSLCKAECEAVDLPGCDGNIDGGGSPACCYPLSDHSSWDFGDGFGVFGKFGCRGFSCWVVPRGENSGKRGV KLEWALWGNSSNRLCADDADFVNATTVASGVRCKCRDGFVGDGYFNGTGCLKSCVKDGREAHGYDCFAKRRSSKMVSVIAGVLGPIFVIASLTALLCLLK RPANGTASYEPNRKSKSHTTVSFRKPWTARSFTFKELEEATRWFEDGQKLTGSGGGSGGGGGEIYAGILADGSKVAVHKVECRDQRDLSQVLSRIEVLSS VFHRNMARIVGCCIDYGYTPLVVYEFPGNGTLDSAASGSTSEPRSADPDPEDSFRRAMCISSARC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46850			Protein kinase superfamily pro...		Lus10030181 [exp]	0	1
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	4.6	0.8925
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	10.5	0.8477
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	13.4	0.8594
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	14.4	0.8754
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	26.0	0.8509
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	26.4	0.8625
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	30.0	0.8579
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	31.0	0.8587
AT5G27920			F-box family protein (.1)		Lus10029869 [exp]	43.6	0.8354
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	45.7	0.8539

Compare expression of checked genes

Lus10030181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.