Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61960 582 / 0 Protein kinase superfamily protein (.1.2) AT2G37840 368 / 6e-118 Protein kinase superfamily protein (.1.2) AT3G53930 360 / 5e-115 Protein kinase superfamily protein (.1.2) AT1G49180 256 / 3e-79 protein kinase family protein (.1.2) AT2G30360 187 / 1e-52 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT1G30270 181 / 4e-50 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G45490 175 / 6e-50 ATAUR3 ataurora3 (.1) AT3G01090 178 / 9e-49 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT4G18700 177 / 1e-48 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G01810 174 / 2e-48 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005135 [exp] 1152 / 0 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 362 / 1e-115 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 357 / 1e-113 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 301 / 1e-97 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 255 / 8e-78 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10020580 [exp] 173 / 3e-49 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10042816 [exp] 177 / 1e-48 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10038889 [exp] 178 / 2e-48 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10030210 [exp] 176 / 2e-48 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107000 [exp] 714 / 0 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 682 / 0 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 364 / 2e-116 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 361 / 2e-115 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G011600 [exp] 298 / 3e-96 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G007200 [exp] 297 / 4e-96 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 267 / 6e-85 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.018G057700 [exp] 174 / 1e-49 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.011G067600 [exp] 179 / 9e-49 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G115900 [exp] 178 / 9e-49 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030182 pacid=23152976 polypeptide=Lus10030182 locus=Lus10030182.g ID=Lus10030182.BGIv1.0 annot-version=v1.0 ATGGATCATCAGCGCAACCGGTCGATTGGCGACTACGTAATCGGGGCAAGACTCGGGTCGGGTTCGTTCGCCGTCGTGTGGCGGGCCAGACACCGGGTCT CGGGTCACGATGTTGCGGTGAAGGAGATTGATAAGAAGCAGCTGAATCCCATCCTTAGCGCCAATTTGCGCAAGGAGATTTCCATTCTCGGTACCATTCG TCATCCCAACATTGTTCGTCTTTACGACGCTTTCGAGACGCCGGATAGGATTTATCTGATACTGGAGTACTGCGACGGTGGCGATTTGGCTCAGTATCTT CATCGCCATGGGGAGGTCTCTGAGTTTGTTGCTAGGCACTTCTTGAAGCAATTAGCTGCAGGATTGCAAGTGTTACAAGAGAAACATGTAATCCACAGGG ACTTGAAACCACAGAACCTGCTGTTGACATCTGATAAGGAAACTCCAGTGTTGAAGATAGGAGATTTTGGCTTTGCTAGGTCCTTGAATCCTAACGACAT GGCTGATACACTTTGTGGATCTCCTCTATACATGGCCCCAGAGATCATTCAGAATAGAAAGTATGATGCCAAGGCTGATTTATGGAGCGTCGGCGCAATT CTATTCCAGCTGGTGACAGGCAGACCACCGTTTCAAGGAAATAGTCAATTTCAGCTCTTTCAGAACATTTTGAGGTCGACCGAGCTGCAGTTTCCAGATG GTGCGTTAGAGACTCTGCATCCCAACTGTGTTGATCTGTGCAGGAGTCTTTTACGCCACAATCCAGTTGAACGACTAACCTTCCAGGAGTTCTTCAATCA TAACTTCTTACAGGAGCCTAGACTAATTGCTGATGTAGATCAGTCTTCTCTTCTCCCACTAACGAAACTAGCGGATGAGCCGTCTCGTGATAAGAGCCTA CAGGTGCATCCTGAGCATCTCATTTGTTCCGGTTTGGGTAATCTGAAGTTAGCAGCTCCATCCGTGACTGATAACGAAAGACAACATGGTAAAGCCGTGA AGAAATCCATTTCGTCAATGCATCAGCCTCAAGTTGCTGACTGCTTGGAGTCCATTGAGAAAGATTATGTTCTTGTCTATCGTCACGTTACTTCAACGGA GAACATCTCCTACTACCTTGCAACGTCCTTGCAAGAAAACTCCAATGTCAGAGTGTCTGTATGTGGACCACAAGCTGAGAAGAACAACAATGATGATACT TTGGCAAATGCTACGCCTTCAAAAGAGGTTGATGCTGATTCCGCTCATAGCATGGAGAATACAGAAGTCCAAGAATCAGATCCCTTAAAGACATCATGCA ATATCAGTGCATCAAAGGAACTTCAAAGTTTGTCGGTATTACATCCGTCAACTAGGCTCCTCTTATTACGGCAATATCTTCAGGCAGTGTCGGAACTGGT TGATGAAAAGTACAAGGCAGAACAATACCCGGAAGCATTTTCACTTGAACTTGTAGTTTTAGCTGCATGGAAGAAAGCAGTTGAGATTTGTGGCTCCTGG CTAACTTCAACTTCTGGAAATGGATCACCTGGAAGCTCAGATACGCCTACAGATAAATCAGGTTTCGACGGGCCATCCTCTGCGAGCAAATGGGCGGAAC AAGGGTTTATTTCTGCTCTTGATCATGGGGAGAAATTGTCCGGACACCTCAAAGGCTTGGATGCCACAGCAGAGATGCCCGATGCAATGGAGATTATATT TCAGAAGGCGCTAGCTCTAGGGAAAGACGGAGCAGTGGACGAGTACATGGGGAACAAGGCGAAGGCTGCTGCCTCGTACTCCAAAGCCTTGCTGCTCTTT TCTTTCATAGTCGGAGAAGCAACTTCTCTGGCGCTGACTCCGCCGTTCACGCTGACTCCTGCTAATCGCCAGCGAATTCATAGCTATATGAGGAACTTAC AGACTCAACAATTGAAGCTTCTGACTTGA
AA sequence Show only first row Show all	>Lus10030182 pacid=23152976 polypeptide=Lus10030182 locus=Lus10030182.g ID=Lus10030182.BGIv1.0 annot-version=v1.0 MDHQRNRSIGDYVIGARLGSGSFAVVWRARHRVSGHDVAVKEIDKKQLNPILSANLRKEISILGTIRHPNIVRLYDAFETPDRIYLILEYCDGGDLAQYL HRHGEVSEFVARHFLKQLAAGLQVLQEKHVIHRDLKPQNLLLTSDKETPVLKIGDFGFARSLNPNDMADTLCGSPLYMAPEIIQNRKYDAKADLWSVGAI LFQLVTGRPPFQGNSQFQLFQNILRSTELQFPDGALETLHPNCVDLCRSLLRHNPVERLTFQEFFNHNFLQEPRLIADVDQSSLLPLTKLADEPSRDKSL QVHPEHLICSGLGNLKLAAPSVTDNERQHGKAVKKSISSMHQPQVADCLESIEKDYVLVYRHVTSTENISYYLATSLQENSNVRVSVCGPQAEKNNNDDT LANATPSKEVDADSAHSMENTEVQESDPLKTSCNISASKELQSLSVLHPSTRLLLLRQYLQAVSELVDEKYKAEQYPEAFSLELVVLAAWKKAVEICGSW LTSTSGNGSPGSSDTPTDKSGFDGPSSASKWAEQGFISALDHGEKLSGHLKGLDATAEMPDAMEIIFQKALALGKDGAVDEYMGNKAKAAASYSKALLLF SFIVGEATSLALTPPFTLTPANRQRIHSYMRNLQTQQLKLLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	0	1
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	3.0	0.7323
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	3.6	0.7918
AT3G62010			unknown protein		Lus10038011 [exp]	9.5	0.6911
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	10.2	0.7629
					Lus10040651 [exp]	14.4	0.6772
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	29.9	0.6863
					Lus10000810 [exp]	31.2	0.6028
AT3G58470			nucleic acid binding;methyltra...		Lus10005597 [exp]	32.3	0.6263
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	35.1	0.6887
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	36.2	0.6716

Compare expression of checked genes

Lus10030182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.