Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01060 134 / 6e-35 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT2G46830 110 / 8e-27 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005134 [exp] 499 / 2e-173 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 216 / 2e-64 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10012602 [exp] 214 / 1e-63 AT1G01060 341 / 7e-108 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106800 [exp] 193 / 1e-55 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.002G180800 [exp] 189 / 4e-54 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030183 pacid=23153010 polypeptide=Lus10030183 locus=Lus10030183.g ID=Lus10030183.BGIv1.0 annot-version=v1.0 ATGGCAGCCATAGCTGCAGCTACTGTCGCCGCAGCAACTGCATGGTGGGCTGCTCACGGTATGCTTCCCATGTGTGCCCCTCAGCATACCGCCGTCACTT GTCCTCCGGCACCAGGAATTCCATCTGCTCATGCTCATAACGATGCGCTCGATACTGAGAAAATCGAAACTAAGGAAGGCGAACTCGAACATCCTCCTTT AGACGATGAACGAATGGATCATGTCAAAGATTCTGAGGCAGCGGAAGCACAGAACTCATCCTCCAAGTCACCTACAATGTCTGAATCACCTAAAGTGGCA GGCCAGGAGATGAATCCAACGACAGTACCTGAAGCACATGATTCTAGCGAACCGAAGAACAAGAAGCAAGTCGATCGATCCTCGTGTGGCTCGAATACAG CTTCCAGCAGCGAAGTGGAGACGGATGCGCTAGAGAAGAATAATGGGAACGAAGGCAATGAAGAAACGAAAGAAGCTGATGTTGCAAATCTTCTTCCGGC CTCAATAACAGATCCTGGCACTCGTAGAATACTTCGAAGCAATGGAGGGATGAACGATTCGTGGAAGTCGGTCTCGCAAGTGGGCCGCCTCGCCTTCCAA GCACTATTCACCAGGGAAAAGCTCCCGCAAAGCTTCTCACCCCCTCAGAACGGAGCCCACGGCGAGGTTGAGATGATGCAGAATGCGGACGAGAGAAACA ACGGAGAGGCCACAACGATAATAGATCTCAACAACAATGCGTGGTGCCATCATCAACCAGAGGAGGAGAACAATGCCGCCTCGCGTAATCACGAGGACGA ATGCTTACCGAAGATAGAAATCGAAAACGGGAAACTACTCAAAGCGCGACGGACAGGATTCAAACCTTACAAACGATGTTCCATGGAGGCCAAGGAAAAC ACGTTGACAACCAGCGGCCAAGGGGACGAGAAGGAGTCCAAGCGGATACGCCTCGCCATTGAAGGGGAAGCTTCGATCTGA
AA sequence Show only first row Show all	>Lus10030183 pacid=23153010 polypeptide=Lus10030183 locus=Lus10030183.g ID=Lus10030183.BGIv1.0 annot-version=v1.0 MAAIAAATVAAATAWWAAHGMLPMCAPQHTAVTCPPAPGIPSAHAHNDALDTEKIETKEGELEHPPLDDERMDHVKDSEAAEAQNSSSKSPTMSESPKVA GQEMNPTTVPEAHDSSEPKNKKQVDRSSCGSNTASSSEVETDALEKNNGNEGNEETKEADVANLLPASITDPGTRRILRSNGGMNDSWKSVSQVGRLAFQ ALFTREKLPQSFSPPQNGAHGEVEMMQNADERNNGEATTIIDLNNNAWCHHQPEEENNAASRNHEDECLPKIEIENGKLLKARRTGFKPYKRCSMEAKEN TLTTSGQGDEKESKRIRLAIEGEASI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	0	1
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	1.4	0.9559
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	2.0	0.9456
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	2.4	0.8735
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	3.5	0.8709
AT3G54500			unknown protein		Lus10024170 [exp]	3.9	0.8668
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	5.2	0.7706
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	5.5	0.8265
AT3G12320			unknown protein		Lus10005384 [exp]	5.7	0.8108
AT3G12320			unknown protein		Lus10024129 [exp]	5.9	0.8199
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	6.6	0.7539

Compare expression of checked genes

Lus10030183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.