Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10490 431 / 7e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 426 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 365 / 4e-126 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 262 / 2e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 229 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 224 / 1e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 220 / 5e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 210 / 3e-65 ATJRG21 jasmonate-regulated gene 21 (.1) AT3G11180 211 / 4e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G51240 204 / 9e-63 TT6, F3'H, F3H TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032930 [exp] 369 / 1e-127 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 363 / 2e-125 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 253 / 3e-82 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 233 / 1e-73 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 229 / 9e-73 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 229 / 3e-72 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 223 / 3e-70 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10000711 [exp] 220 / 2e-69 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 216 / 3e-67 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G451900 [exp] 485 / 3e-173 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 484 / 5e-173 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 483 / 1e-172 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 421 / 3e-148 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 370 / 3e-128 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 369 / 1e-127 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 367 / 1e-126 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451300 [exp] 317 / 3e-107 AT4G10500 326 / 1e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150300 [exp] 316 / 1e-106 AT4G10500 327 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150200 [exp] 311 / 6e-105 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030185 pacid=23153204 polypeptide=Lus10030185 locus=Lus10030185.g ID=Lus10030185.BGIv1.0 annot-version=v1.0 ATGCTGACCGACATTGCCACCGGCGCCACCGAAGTTCCCACCAACTACATTCGACCCCTCTTGGATCGGCCCAACCTCAAGGAAGCCGAAACTTCATCCG TTTCGATCCCTGTTGTCGACCTACACGGTCTGGATGAGGTAGATGGTCCGAACCGGACTCGAATTGTTGATGAGATAGGTGCAGCTTGTAGAGACTATGG CTTCTTTCAGATCAAGAACCATGGAATCCGCAAACTGGTACTCGACGCGATGTTGGAAGTCTCTAGAAACTTCTTCCACCTTCCAGAATCCGAGCGTCTC AAAAGCTACTCGGACGACCCGACCAAACCGGTCCGGCTCTCCACAAGTTTCAACGTCCGAACCGAACAGGTGGCCAACTGGAGAGACTTCCTGAGGCTCT ACTGTTATCCGGTAGAGGACTACGTGCAGGATTGGCCCACCAACCCACCTGAATTTAGGGAGCACGTGGTGGAGTACTGCACGCGCGTGAGAGAGGTAGC GCTGAAGCTTCTGGGGGCAATCTCGGAAAGCCTGGGATTGGAGAAGGAGTACATGAACTGCGGCGCGTTGGGAAAGCACGCGCAGCATATGGCTATCAAT TACTACCCGCCCTGCCCACAACCGGAGCTGACTTTCGGGTTGCCTGCCCATTCCGACCCGAATGCGGTGACACTCCTGTTACAGGATGACGTGCCCGGGT TGCAGGTTCTCAAAGATGGGAAGTGGGTTTTGGTTAACCCGATTCCTTACACCTTTATTGTTAATATTGGTGACCAGATCCAGGTAATTAGCAATGACCG ATATAAGAGTGTGTTGCACAGGGCGGTAGTGAGCAGCACCAAGGAGCGAATCACCGTGCCAACTTTTTACTGCCCTTCACCGGGCGCAATCATAGGTCCG GCACCGCCGCTCGTGGACGAAGAACACCCAGCTATCTACCAGAACTTCACGTACGGGGAATATTATGACAAGTTTTGGGACCGGGGGCTTGCTTCGGAGA CTTGTCTTGATATGTTCAAATCTAACTCCCTGTAA
AA sequence Show only first row Show all	>Lus10030185 pacid=23153204 polypeptide=Lus10030185 locus=Lus10030185.g ID=Lus10030185.BGIv1.0 annot-version=v1.0 MLTDIATGATEVPTNYIRPLLDRPNLKEAETSSVSIPVVDLHGLDEVDGPNRTRIVDEIGAACRDYGFFQIKNHGIRKLVLDAMLEVSRNFFHLPESERL KSYSDDPTKPVRLSTSFNVRTEQVANWRDFLRLYCYPVEDYVQDWPTNPPEFREHVVEYCTRVREVALKLLGAISESLGLEKEYMNCGALGKHAQHMAIN YYPPCPQPELTFGLPAHSDPNAVTLLLQDDVPGLQVLKDGKWVLVNPIPYTFIVNIGDQIQVISNDRYKSVLHRAVVSSTKERITVPTFYCPSPGAIIGP APPLVDEEHPAIYQNFTYGEYYDKFWDRGLASETCLDMFKSNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10030185 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	4.4	0.8725
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	4.9	0.8610
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	7.9	0.8578
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10007417 [exp]	8.0	0.7313
					Lus10013260 [exp]	9.8	0.8511
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	11.0	0.8511
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	12.0	0.8511
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	13.0	0.8511
					Lus10005297 [exp]	13.9	0.8511
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	14.1	0.7849

Compare expression of checked genes

Lus10030185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.