Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 211 / 4e-67 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 173 / 7e-52 O-methyltransferase family protein (.1) AT1G33030 164 / 1e-48 O-methyltransferase family protein (.1) AT1G51990 163 / 2e-48 O-methyltransferase family protein (.1.2) AT1G63140 141 / 7e-40 O-methyltransferase family protein (.1.2) AT1G21110 140 / 1e-39 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G77530 140 / 2e-39 O-methyltransferase family protein (.1) AT1G21100 138 / 1e-38 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 137 / 4e-38 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G76790 136 / 4e-38 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002669 [exp] 419 / 9e-149 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10002667 [exp] 343 / 7e-119 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10005133 [exp] 337 / 5e-116 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10006146 [exp] 273 / 3e-91 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10032929 [exp] 202 / 2e-63 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 202 / 3e-63 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10002668 [exp] 142 / 2e-41 AT1G51990 102 / 2e-25 O-methyltransferase family protein (.1.2) Lus10009442 [exp] 119 / 3e-31 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014400 [exp] 98 / 9e-24 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106600 [exp] 276 / 3e-92 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 274 / 5e-92 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 269 / 1e-89 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 269 / 1e-89 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 268 / 2e-89 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 268 / 3e-89 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 228 / 2e-73 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 223 / 9e-72 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 185 / 1e-56 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 182 / 1e-55 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10030188 pacid=23153145 polypeptide=Lus10030188 locus=Lus10030188.g ID=Lus10030188.BGIv1.0 annot-version=v1.0 ATGACGAATTCATATGCTCCGGTCATGGTTGACCGGACGCTTAGGCTAATGGGTAGTCATTCGATTGTAGATTGCACTTTGGAAGACGACGGTGGGTCCA GCCGGAAGCAGAGCAAGCATGGGTTGAACTCTGTTTCGAAGTGGTTTGTGAAGAACGAAGATGGTGTCTCTTTGGCTCCCTTCATGTCGTTGGTTCAAGA CAATCACATCATGGCATCCTGGCTTGAGCTGAAGAACGTGGTGCTGGAAGGAGGAATTTCATTTAATAGAGTTCATGGAGCTAGCAGTTTGGAATATACA GGAATAGATCAAAAGTTTAACCAAGTTTTCAATGCAGCAATGTACAATCCTACAAAACAAGTCCTCCATTCCTACAAAGGATTCGAACAGTTGAATCTCC CCGTCGACGTCGGAGGTGGATTAGGACACGCCATCGAGGCTATAACTTCAAAGTACCCACATATTAAGGGAATCAATTTCGACTTGCCTCATGTCAACTG CTACAAGGCGATTCCAGACAACGGGAGGGTAATAGTTATGGACATGGTGGCTCCGATCGTGCCTGATGCGACGACAAGTTCGAAGATAATCGCTCAAGCA GATGTATTGATGATGGCAACAAATACGGGAGGGAACGAACGCACCAGAGACGAGTTTTTGGCTCTAGGGATCGGAGCTGGGTTTAAAGGGATTGGGTTCG AACTACTTATATGTAACTATTGGATCATGAAGTTCTACAAATGA
AA sequence Show only first row Show all	>Lus10030188 pacid=23153145 polypeptide=Lus10030188 locus=Lus10030188.g ID=Lus10030188.BGIv1.0 annot-version=v1.0 MTNSYAPVMVDRTLRLMGSHSIVDCTLEDDGGSSRKQSKHGLNSVSKWFVKNEDGVSLAPFMSLVQDNHIMASWLELKNVVLEGGISFNRVHGASSLEYT GIDQKFNQVFNAAMYNPTKQVLHSYKGFEQLNLPVDVGGGLGHAIEAITSKYPHIKGINFDLPHVNCYKAIPDNGRVIVMDMVAPIVPDATTSSKIIAQA DVLMMATNTGGNERTRDEFLALGIGAGFKGIGFELLICNYWIMKFYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004906 [exp]	5.7	0.8491
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	5.7	0.8405
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	9.1	0.8477
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	12.1	0.7260
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	13.2	0.8172
					Lus10018424 [exp]	14.0	0.7981
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	19.5	0.8304
AT5G03990			unknown protein		Lus10019039 [exp]	20.9	0.6911
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	26.2	0.7928
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	29.5	0.7966

Compare expression of checked genes

Lus10030188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.