Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 430 / 8e-147 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 428 / 6e-146 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G57260 427 / 9e-146 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26330 424 / 3e-144 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 421 / 3e-143 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26290 411 / 2e-139 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26180 410 / 3e-139 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT5G25120 405 / 3e-137 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26170 405 / 4e-137 CYP71B19 "cytochrome P450, family 71, subfamily B, polypeptide 19", cytochrome P450, family 71, subfamily B, polypeptide 19 (.1) AT5G25140 404 / 1e-136 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024315 [exp] 368 / 2e-122 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10043308 [exp] 352 / 2e-116 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10034505 [exp] 352 / 4e-116 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 350 / 3e-115 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 348 / 1e-114 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10023140 [exp] 346 / 3e-114 AT3G26300 457 / 8e-158 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10019457 [exp] 341 / 8e-112 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 336 / 1e-109 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012400 [exp] 335 / 1e-109 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184900 [exp] 580 / 0 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 577 / 0 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184000 [exp] 573 / 0 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.010G049200 [exp] 494 / 2e-172 AT3G26320 435 / 1e-149 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025300 [exp] 374 / 1e-124 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 372 / 4e-124 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 369 / 8e-123 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 358 / 1e-118 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 357 / 5e-118 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 357 / 7e-118 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030189 pacid=23153017 polypeptide=Lus10030189 locus=Lus10030189.g ID=Lus10030189.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTCCTCTTGATTCTCTTACTATTACTAATCCCCTTTTTCCTTCTTCTCATCATCAAACCGAAAACCAGGAACCGAAATCTTCCGCTGAGTC CACCCAGGCTCCCGATTTTGGGCAACTTGCACCAGCTTGGTGCTCTGCCGCACCAATCCCTCTGGCGACTCTCACAAAAATACGGCCCTGACATCCTGCA ATTCCATTTCGGAAGGATACGTTCGGTCATAATCTCCTCCCCCGAAGCCGCGAAACAAGTCATGAAAATCAACGACCTCGCCACCTGCAGCAGGCCGTCT TTCGACGGAAGCCGGAGGTTGACTTACGGCTACCTGGACGTGGGGTTCTCGCCTTATGCAGAGAACTGGAGGTTCATGAGGAAGATGATCATACTCGAGC TCTTCAGCTTGAAACGGGTCAAGTCATTCCGGTTTGTTCGAGAGGAAGAGGTCTGGTTTCTGATCGATTCTTTGAGAAATCGATCAGAAACCGGTATTGT CAATCTCACTGAGAAACTATTCGCCCTAACGGCGAACATAACGTTCAGGATGTCATTTGGTTATAATTATCGCGGGACAGAGTTTGATAAAGACAGGTTT CATGAGGTTGTTCATCAGGCTGAGGTTGTGGCCGGGAGCATTTCGGCCAAGCAGTCGTTGGGTCCGGTGATTGGTTGGGTTGTCGACAAGTGGACCGGGC ACCATTCTAGGATCGAACGGGTTTTTGGCGAGCTAGACTGTTTCTTTAGTCATGTTATTGACGAACACTTGAAAAATGGGAAGGAGAAGACGGATGATGA AAAGGACATGATTGATGTGTTGCTTGAAGTTGAGGGAGAAGAATCTCGACTTGGTGAATCGTCTCGGTTCAAACGAGATAATATTAAGGCAGTTCTCTTG AACTTGTTCTTAGGAGGAGTAGACACGGCGGCACTAACTCTAACCTGGGCAATGGCGAGGCTTTTGGCGAATCCCACTTCGATGAAGAAAGCACAAGAAG AAGTCAGAAACATGGTCGGAGCTGACAAAGGCAGGGTGACAGAAGACGACCTCGAAAAACTCGAATATCTGAAAATGATCGTTAAGGAAACGCTCAGACT TCACCCACCCGCTCCTCTCCTCCTCCCCAGAGAATCAATGTCCGACACGAAAATATGCGGCTACGATGTTCCAGCCAGGACACTGATCCACGTGAATGCG TGGGGGATCGGTCGCGATCCGAACTACTGGAAAGATGCAGAGAAATTTGTGCCAGAGAGATTTGCAGACAGTACTAGCTCACCGGATTACAGAGGGCAGA GTTTCGAGTACTTGCCATTCGGGTCTGGCCGGAGAGTCTGTCCGGGGATACACATGGGGACGATCACGGTCGAGATCGCACTGGCGAATCTGCTGTATCG TTTCGATTGGAAGCTTCCCGATGGGATGAAACCTGAAGATGTGACCATGGAAGAGCAGAGTGGTGTTAGTCTAACTGTGTCCAAGAAAGAGCCTCTACTT CTTATTCCTGTTAATTGGGCAAAATAG
AA sequence Show only first row Show all	>Lus10030189 pacid=23153017 polypeptide=Lus10030189 locus=Lus10030189.g ID=Lus10030189.BGIv1.0 annot-version=v1.0 MAAFLLILLLLLIPFFLLLIIKPKTRNRNLPLSPPRLPILGNLHQLGALPHQSLWRLSQKYGPDILQFHFGRIRSVIISSPEAAKQVMKINDLATCSRPS FDGSRRLTYGYLDVGFSPYAENWRFMRKMIILELFSLKRVKSFRFVREEEVWFLIDSLRNRSETGIVNLTEKLFALTANITFRMSFGYNYRGTEFDKDRF HEVVHQAEVVAGSISAKQSLGPVIGWVVDKWTGHHSRIERVFGELDCFFSHVIDEHLKNGKEKTDDEKDMIDVLLEVEGEESRLGESSRFKRDNIKAVLL NLFLGGVDTAALTLTWAMARLLANPTSMKKAQEEVRNMVGADKGRVTEDDLEKLEYLKMIVKETLRLHPPAPLLLPRESMSDTKICGYDVPARTLIHVNA WGIGRDPNYWKDAEKFVPERFADSTSSPDYRGQSFEYLPFGSGRRVCPGIHMGTITVEIALANLLYRFDWKLPDGMKPEDVTMEEQSGVSLTVSKKEPLL LIPVNWAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	1.7	0.9531
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	2.2	0.9700
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	3.7	0.9559
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10017096 [exp]	4.4	0.9361
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	4.6	0.9459
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	5.3	0.9531
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	10.1	0.9242
					Lus10026081 [exp]	10.7	0.9476
					Lus10038520 [exp]	11.0	0.9453
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	11.1	0.9214

Compare expression of checked genes

Lus10030189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.