Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61770 493 / 7e-176 PPAN PETER PAN-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002672 [exp] 636 / 0 AT5G61770 492 / 4e-176 PETER PAN-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204900 [exp] 523 / 0 AT5G61770 491 / 3e-176 PETER PAN-like protein (.1.2.3) Potri.014G129700 [exp] 511 / 0 AT5G61770 521 / 0.0 PETER PAN-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10030190 pacid=23153023 polypeptide=Lus10030190 locus=Lus10030190.g ID=Lus10030190.BGIv1.0 annot-version=v1.0 ATGGAACAGAAGAGAAAAGTTTTCGTGAAGCCGATTGTGCAGAAGAAGGCGGCGGCAGCCAATGTGGATCATGTATCCGGCGATAAGATTCCAAAGAGCT TTGTGTTTTCCAGAGGGAAGCTGCCTGGCTCTCTAAGGCAGCTTCAGACGGATTTGAGGAAGTTAATGCTTCCATATACAGCTCTTAGTCTAAAGGAGAA GAAGAGGAACAATCTAGGGGACTTCTTGAATGTTGCTGGTCCAATGGGTGTAACACATTTCCTAATGTTGTCCAAGCCAGCGGCTAATCCGTATTTGAAA GTTGCTAGAACTCCTCAAGGGCCGACTGTTACTTTCAAGATAGACGAGTACTCCCTGGCGTCTGATATTATCAAGTCTCAGTTGCACCCTAGATGTCCTC CTGATCTTTTCAAGAACCCCCCTTTGGTTGTTCTTTCTGGATTTGGGTCTGGAGAGCAGCATCTAAAGCTCACGACTATAATGTTTCAGAATATGTTTCC AGCTATTGACATTAACACCGTGAAGCTGTCTTCTTGCCAAAGAGTTGTCTTACTTAATTACAATAAAGATACGAAACTCATTGACTTTAGGCATTACTCG ATCCGACTACAACCCGTTGGTGTCTCCCGCCGAATCAGGAAATTCGTGCAGAACCACCAAGTCCCTGATCTTAGGAGTCTCCAAGACGTTAGTGACTTTG TTACAAAGGCTGGCTATGGATCGGAAAGTGAAGGGGATGAGGAAGCAGCTACTGTTACCTTGCCTTGTGATCTTGGTAGAGTAAACCGGGTTGCTTCAAA AAGTGCTGTCAGGCTTCAGGAAATCGGTCCGAGAATGACCCTTCAGCTTGTTAGAGTCGAGGAAGGATTATGCACTGGAACCGTCATCTTTGATGAATTT GGTATATATCCTCTTTTCAACCTTTACAGCGTGTTGAAGAGAGTCATCTTGGTGTATAACTTGTCTCTTGTTTGTGTCGAGCTTCTTGAATGCTTATCCA ATGTCGTGATCGCTTATGTGTTGTTAAACTCATTCTGTTTAGGTAATTCTTGTAACAACAAGAGTAAAACTGGGAAAGAGAATCAGAAGAACCAAGGCGA TGGAAAGGATAACGAAGACGGAGACTTAGTCGGTGACGATTATGAGGGAGAAGACAGTGAAGGTGATGAGGAAGCTGCTGAGTAA
AA sequence Show only first row Show all	>Lus10030190 pacid=23153023 polypeptide=Lus10030190 locus=Lus10030190.g ID=Lus10030190.BGIv1.0 annot-version=v1.0 MEQKRKVFVKPIVQKKAAAANVDHVSGDKIPKSFVFSRGKLPGSLRQLQTDLRKLMLPYTALSLKEKKRNNLGDFLNVAGPMGVTHFLMLSKPAANPYLK VARTPQGPTVTFKIDEYSLASDIIKSQLHPRCPPDLFKNPPLVVLSGFGSGEQHLKLTTIMFQNMFPAIDINTVKLSSCQRVVLLNYNKDTKLIDFRHYS IRLQPVGVSRRIRKFVQNHQVPDLRSLQDVSDFVTKAGYGSESEGDEEAATVTLPCDLGRVNRVASKSAVRLQEIGPRMTLQLVRVEEGLCTGTVIFDEF GIYPLFNLYSVLKRVILVYNLSLVCVELLECLSNVVIAYVLLNSFCLGNSCNNKSKTGKENQKNQGDGKDNEDGDLVGDDYEGEDSEGDEEAAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	0	1
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	1.7	0.9369
AT1G13160			ARM repeat superfamily protein...		Lus10006236 [exp]	1.7	0.9280
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	4.0	0.9362
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	5.9	0.9254
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	6.5	0.8956
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	6.9	0.9203
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	7.1	0.9002
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	8.4	0.9029
AT1G30240			unknown protein		Lus10026071 [exp]	11.5	0.9068
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	12.2	0.9088

Compare expression of checked genes

Lus10030190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.