Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01410 158 / 9e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 108 / 1e-28 NHL12 NDR1/HIN1-like 12 (.1) AT5G06330 104 / 3e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 103 / 1e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 103 / 1e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 102 / 2e-26 NHL1 NDR1/HIN1-like 1 (.1) AT4G09590 99 / 9e-25 NHL22 NDR1/HIN1-like 22 (.1) AT2G35970 96 / 5e-24 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 95 / 2e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 92 / 3e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010103 [exp] 179 / 8e-56 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 98 / 1e-24 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 96 / 9e-24 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 93 / 2e-22 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 92 / 2e-22 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10016960 [exp] 92 / 3e-22 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10043410 [exp] 89 / 4e-21 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 88 / 1e-20 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 87 / 3e-20 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180000 [exp] 205 / 2e-66 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 196 / 1e-62 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 107 / 5e-28 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 101 / 5e-26 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.009G019600 [exp] 101 / 7e-26 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 94 / 3e-23 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 94 / 4e-23 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 91 / 5e-22 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G228600 [exp] 73 / 8e-15 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.018G052500 [exp] 68 / 3e-13 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10030193 pacid=23153136 polypeptide=Lus10030193 locus=Lus10030193.g ID=Lus10030193.BGIv1.0 annot-version=v1.0 ATGTCTGATCAAGAACCACAACATCATCATCACTGCCCTCCCCAAGAAGAACCCATCGCCCACCAATTCCACTTCCCAACAAACAATACCCAAATTCCAT CCGAATCCGACCCAAAACTCCACCCCCACTACCACCAGCCAACCAATACCCAAATCCCATCCGAATCCGACCCAAAACTCTACCACCACTACCACCGGCC AACCAAACACGTGCCACCGCCACATGTCCCAGCTCGAGGCCGCCATGTGGCAACCGCAATCATCATCGCCGTCCTCCTCTTGCTCATCATCGGTGTCGCC TTCCTCACACTCTGGCTCGTCTACCGGCCCCACAAGCCCCGATTCACTGTCGTTGCTGCTGCCGTCTACTTACTGAATGCCACTTCACCTCCCTTACTGG TCGCGGGCTTCCAGTTTACCCTCGTGGCACGTAACCCTAACTGTCGCGTTTCGATCTTGTACGACCATCTAACTACATATGTGTCGTACAGGAATCAGGC GATCACGGACCCCATGGCTCTCCCGGCGATACACCAACCAAGGAAGGCCACTGTGGCATTCTCGCCCATGATTGGGGGCCAGGGCGTGCCTGTGTCGGTT GATGTGACGAATGGGCTCGCGACAGATGTTACGTATGGGGTCGTGCCAATGGCGGTGGTGGTGGTCGGTAAGCTGAGGTGGAAGGTTGGGGTTTTGAGGA CCAAAAGATACAGGGTTTGTGTGAAGTGCGATATTTTGATCGGGTTGAAACGGGGTTGTTCGCTCGGTCAAGTTCCGCTGCTTGGGTCATCCCAGTGTAA AGTTGACATGTAA
AA sequence Show only first row Show all	>Lus10030193 pacid=23153136 polypeptide=Lus10030193 locus=Lus10030193.g ID=Lus10030193.BGIv1.0 annot-version=v1.0 MSDQEPQHHHHCPPQEEPIAHQFHFPTNNTQIPSESDPKLHPHYHQPTNTQIPSESDPKLYHHYHRPTKHVPPPHVPARGRHVATAIIIAVLLLLIIGVA FLTLWLVYRPHKPRFTVVAAAVYLLNATSPPLLVAGFQFTLVARNPNCRVSILYDHLTTYVSYRNQAITDPMALPAIHQPRKATVAFSPMIGGQGVPVSV DVTNGLATDVTYGVVPMAVVVVGKLRWKVGVLRTKRYRVCVKCDILIGLKRGCSLGQVPLLGSSQCKVDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	0	1
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	2.0	0.9549
AT3G20650			mRNA capping enzyme family pro...		Lus10010478 [exp]	2.0	0.9549
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	3.5	0.9295
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	3.5	0.9356
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	4.6	0.9361
AT2G46630			unknown protein		Lus10030217 [exp]	6.3	0.9305
AT3G26350			unknown protein		Lus10006464 [exp]	9.4	0.9186
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	9.9	0.9121
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10010143 [exp]	11.1	0.8735
AT2G46630			unknown protein		Lus10005994 [exp]	11.3	0.9096

Compare expression of checked genes

Lus10030193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.