Plant FIBer expression Database

Lus10030195 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01400 1221 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002677
[exp]
1513 / 0 AT4G01400 1222 / 0.0 unknown protein
Lus10012607
[exp]
302 / 5e-96 AT4G01400 279 / 6e-88 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G179600
[exp]
1293 / 0 AT4G01400 1209 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0294 Sec10 PF08318 COG4 COG4 transport protein
Representative CDS sequence
>Lus10030195 pacid=23153069 polypeptide=Lus10030195 locus=Lus10030195.g ID=Lus10030195.BGIv1.0 annot-version=v1.0
ATGCCTTCCACTCCCAACGGATCAGCGCACAGTTCCCTCGACGATGATGAAGCCACAGCATCCTCCTCCATTAAATTCGGTTCGCCGGAGGCTCTAGATC
ACGTCCGAAACCTAACCGACGTCGGAGCTATGACAAGGCTCCTCCACGAGTGCATCGCGTACCAGCGAGCTCAGGACGACGAGCTCGACGGTTTACTCGC
TCAGAGGACTGATCTCGACAAGCAACTCGTCCATCTCCAGAAATCGGCCGAGGTGCTCGACATTGTGAAGGCGGATTCCGACTACATGCTCAGCAACGTC
GGATCCACGTGTGATCTCGCCGACAGCGTCAGCGCCAAGGTCAGGGAGCTGGACCTAGCTCAGTCGCGTGTGAACTCGACGCTGCACCGGATCGATGCGA
TTGTCGAGAGAGGGAATTGCATCGAAGGAGTGAAGAACGCTCTGGAATCGGAGGATTACGAGTCCGCCGCCAAGTACGTGCAGACGTTTCTCCAGATTGA
TGCTAAGTACAAGGATTCCGGATCAGAGCAGAGAGATCAGTTACTGGCGTCCAAGAAGCAGCTGGAAGAAATTGTTCGGAGACGGCTCTCTGCTGGGGTG
AAGGAGCGTGATCATCCCACGATTCTGAGGTTTATTCGGCTCTATTCGCCTCTTGGATTGGAGGAGGAAGGGTTACAGGTTTATGTAGTGTATTTAAGGA
AGGTGATTTCTATGAGGTCTCGGCTTGAATATGATCATTTGGTGGAGCTGATGGAGCAGTCTCATACTCAAAACCAGGTTGATTTCGTTGGTTCTTTGAC
TAGCTTGTTTAAAGACATTGTTTTAGCCATTGAAGAAAATTACGAGATCTTGAGGAGTCTCTGTGGAGAAGATGGGATTGTTTACGCCACTTGTGAATTG
CAAGAGGAGTGTGATTCTAGGGGTACTATGATTTTGAAGAAGTACATGGAATACAGGAAATTAGCTAAGTTAGCCTCAGAGATTAATGCCCAAAACAAGA
ACTTGCTTGCCGTTGGAGGAGGACCAGAAGGACCTGATCCGAGAGAGGTTGAATCGTACCTACACGAGATTCTATCTCTGATGCAACTGGGTGAAGATTA
CACAGGGTTTATGGTTTCCAAGATTAAAGGTTTGACCTCAGTTGATCCGGAGTTGGTGCCAAGAGCCACAAAGGCTTTTAGGAATGGGAGCTTTAGCAGA
GTAGTCCAAGACATTACTGGATTTTATGTGATCTTGGAAGGATTCTTCATGGTTGAAAACGTTAGGAAAGCCATTCGGATTGATGAGCAAGTGCCTGATA
GCCTCACCACTTCTATGGTGGATGATGTGTTCTATGTTCTGCAGAGCTGCTTAAGGAGGGCGATTTCCACTTCAAACATCAGCTCAGTGATTGCTGTCCT
TAGCGGTGCAGGTAGTTTGTTGAGCAACGAATACCAAGAGGCTTTGCAGCAGAAAATGAGGGAGCCAAACCTTGGCGCGAAATTGTTTCTTGGTGGTGTT
GGTGTGCAAAAGACCGGGACAGAGATCGCAACTGCTCTCAACAATGTGGACGTCAGCAGTGAGTATGTACTGAAGTTGAAGCATGAAATTGAAGAGCAAT
GTGCAGAGGCATTTCCGGCCCCAGCCGATAGAGAAAAGGTGAAATCTTGTTTATCCGAGTTGGGAGACACAAGCACTACGTTCAAGCAGGCACTCACCGC
CGGATTGGAGCAACTCGTCGCGACAGTGACTCCCCGAATCCGGCCGGTCCTCGACAACGTGGCAACTATCAGCTATGAGCTGTCGGAATATGAATACGCG
GAGAACGAGGTGAACGATCCCTGGGTTCAGAGGCTTCTCCACTCCGTCGAGACCAACGTATCGTGGCTTCAACCTTCGATGACCGCCAGCAACTACGACT
CGTTCGTCCACTTGGTCATCGACTTTATCGTCAAGAGACTGGAAGTGATCATGATGCAGAAGAGGTTTAGCCAGTTGGGCGGGCTCCAGCTGGACAGGGA
CACGAGGGCTTTGGTCAGTCATTTCTCCGGGATGACTCAGCGGACGGTGAGGGACAAATTCGCCCGGCTCACCCAGATGGCGACTATACTTAACTTGGAG
AAGGTGTCGGAGATCCTCGATTTCTGGGGGGAGAACTCTGGTCCAATGACCTGGAGGCTGACTCCTGCTGAGGTTAGAAGGGTGCTGGGTTTGAGGGTTG
ACTTTAAACCTGAAGCAGTTGCTTCTCTTAAGCTGTAA
AA sequence
>Lus10030195 pacid=23153069 polypeptide=Lus10030195 locus=Lus10030195.g ID=Lus10030195.BGIv1.0 annot-version=v1.0
MPSTPNGSAHSSLDDDEATASSSIKFGSPEALDHVRNLTDVGAMTRLLHECIAYQRAQDDELDGLLAQRTDLDKQLVHLQKSAEVLDIVKADSDYMLSNV
GSTCDLADSVSAKVRELDLAQSRVNSTLHRIDAIVERGNCIEGVKNALESEDYESAAKYVQTFLQIDAKYKDSGSEQRDQLLASKKQLEEIVRRRLSAGV
KERDHPTILRFIRLYSPLGLEEEGLQVYVVYLRKVISMRSRLEYDHLVELMEQSHTQNQVDFVGSLTSLFKDIVLAIEENYEILRSLCGEDGIVYATCEL
QEECDSRGTMILKKYMEYRKLAKLASEINAQNKNLLAVGGGPEGPDPREVESYLHEILSLMQLGEDYTGFMVSKIKGLTSVDPELVPRATKAFRNGSFSR
VVQDITGFYVILEGFFMVENVRKAIRIDEQVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSGAGSLLSNEYQEALQQKMREPNLGAKLFLGGV
GVQKTGTEIATALNNVDVSSEYVLKLKHEIEEQCAEAFPAPADREKVKSCLSELGDTSTTFKQALTAGLEQLVATVTPRIRPVLDNVATISYELSEYEYA
ENEVNDPWVQRLLHSVETNVSWLQPSMTASNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLE
KVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAVASLKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G01400 unknown protein Lus10030195
[exp]
0 1
AT4G01400 unknown protein Lus10002677
[exp]
1.0 0.9678
AT1G51540 Galactose oxidase/kelch repeat... Lus10034826
[exp]
1.4 0.9488
AT1G80510 Transmembrane amino acid trans... Lus10034093
[exp]
2.4 0.9328
AT5G64970 Mitochondrial substrate carrie... Lus10026043
[exp]
3.2 0.9040
AT2G32380 Transmembrane protein 97, pred... Lus10039668
[exp]
4.2 0.9064
AT5G57460 unknown protein Lus10028963
[exp]
5.0 0.9257
AT2G32450 Calcium-binding tetratricopept... Lus10010627
[exp]
5.7 0.8965
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10014435
[exp]
6.0 0.9309
AT1G67930 Golgi transport complex protei... Lus10007330
[exp]
8.1 0.9118
AT2G32450 Calcium-binding tetratricopept... Lus10033182
[exp]
8.4 0.8999

Lus10030195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.