Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01090 270 / 1e-88 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1) AT1G59900 102 / 5e-25 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 102 / 6e-25 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G09300 50 / 1e-06 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002678 [exp] 344 / 2e-117 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Lus10013295 [exp] 99 / 1e-23 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 94 / 1e-21 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 79 / 2e-16 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 71 / 5e-14 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10020895 [exp] 48 / 3e-06 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10028648 [exp] 45 / 3e-05 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 44 / 0.0001 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179500 [exp] 281 / 9e-93 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Potri.010G038400 [exp] 82 / 8e-18 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 79 / 1e-16 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.005G064000 [exp] 49 / 2e-06 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 45 / 5e-05 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.005G185400 [exp] 42 / 0.0004 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10030197 pacid=23153172 polypeptide=Lus10030197 locus=Lus10030197.g ID=Lus10030197.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCTGCTTTCTCTCTCGCCGCCTCCTCCATCTCTGCTTCCAGATCTCAAGATAAGCTCTGTTCCCCAACTCTTTCCACCGCCGCCAATTCTT CCTTCCTTGGATCTGCTAGCCAATTCCGATGCAAATCTGTTCGTCGGCCGATTTCCCTCCGCCGCCGCGGCGCATCTTCCTCCGTCGCCGCCGCCCTCTC CGATGTAAAGGAGAAGAAATCCAAGGCTAGCTCCAATCTGTTGATTACCAAAGAAGAAGGTTTGGTTCTATATGAAGACATGGTGTTAGGAAGAGCATTT GAGGACATGTGTGCCCAAATGTACTACAGAGGCAAAATGTTCGGCTTCGTCCATCTCTACAACGGCCAAGAAGCCGTCTCCACCGGATTCATCAAGCTAC TAACCAAGGAAGACTCCGTCGTCAGCACCTACAGAGACCACGTCCATGCCTTGAGCAAAGGCGTCCCGGCACGTGCTGTGATGAGCGAGCTCTTCGGCAA GACCACCGGATGCTGCCGCGGCCAAGGCGGGTCGATGCACATGTTCTCCAAAGAACACAATGTTCTCGGCGGGTTCGCATTCATCGGTGAAGGAATCCCC GTAGCCACCGGTGCGGCTTTCGCGGTGCGTCTTTCGCCTACAAGTATCGGAAGGAAGTTCTCAAGGCACCCGATAGCGATCAGGTGGCGGTGGCGTTTTT CGGAGACGGAACGTGTAACAACGGGCAGTTCTTCGAGTGTCTCAACATGGCCGCGTTGTGGAAGTTGCCGATTGTGTTTGTTGTCGAGAATAATTTGTGG GCTATTGGGATGTCGCACTTGA
AA sequence Show only first row Show all	>Lus10030197 pacid=23153172 polypeptide=Lus10030197 locus=Lus10030197.g ID=Lus10030197.BGIv1.0 annot-version=v1.0 MASAAFSLAASSISASRSQDKLCSPTLSTAANSSFLGSASQFRCKSVRRPISLRRRGASSSVAAALSDVKEKKSKASSNLLITKEEGLVLYEDMVLGRAF EDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKEDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIP VATGAAFAVRLSPTSIGRKFSRHPIAIRWRWRFSETERVTTGSSSSVSTWPRCGSCRLCLLSRIICGLLGCRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	0	1
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10002678 [exp]	1.4	0.9000
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	7.2	0.8450
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	8.8	0.8286
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030196 [exp]	9.0	0.7896
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	10.1	0.8350
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	11.0	0.8402
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	11.0	0.8197
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	11.5	0.8412
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	12.4	0.8238
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	15.5	0.8081

Compare expression of checked genes

Lus10030197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.