Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00800 1452 / 0 SETH5 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002679 [exp] 2733 / 0 AT4G00800 1922 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G105601 [exp] 1842 / 0 AT4G00800 1966 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10030199 pacid=23153189 polypeptide=Lus10030199 locus=Lus10030199.g ID=Lus10030199.BGIv1.0 annot-version=v1.0 ATGACCAAGAACCTCACCGCCGCCGTCGCCGGCGAGCCCTCAGTAGAACTCGACCTCGTCTCTTTCCTCAAACTCCACTCCACTTCCGACGACGACGACG ATCCTAATCCCCTTCCTCACCGCTCCCTCGGCGAAATCCTCAACGACTCCGATTCCTCTCCTTCTCCTCCTTCCTCCCCTTCGTCTGGTCTCATCCGCTC TCCGGATTTGCATCCGCAACCTCTTAACCGCGCGCAATCTCTCGGTTCGGGTTACAATTCTGGACAGTCCAAGTCCGATTCGTTTGCTCGGGTTAGGACC AGCTTGTTATCCACTGATCGCTCCTGGAGAGGAGCTTCCGCTGCTTCTACTGCGAATCGGACGTTGCCGTCTTTGTTTGGCGGAGTGAGATCCAATGTGA AACCAGGTGCGGCGCTTGCTGCTGCTGCTGCGGCTTCGAGGTCGCTCCCGACTCCGCACGCTGCCGCGATCAAGTCCAAGAGGGCCAGCAGTGTAACTGC CGCGGCGCTGCAGAAGGTTCTGGTGAGTGAAGAGTTGTGTTCCGGTGGTGGTGGTGGTTTTGATCCGGAGATTGCTTCGACTCCGTCAAATGGAGAGTCC GTTGAAGCTGGGAGCTCTGAGAAGGAAATCGCTGAAACGAACAAAGATGAAAATGAAGTCAAATCTGAAATTGAAGTGGATGAACGAGCTGTTAACGCTG ACAGTGGAGTTAGCCGAATTTCCGATGCTACCATTAGCCAAACTCCGGATGATGCTGTGGCAGTTTCAGCTTCCAGAAGATATCAGGATAATGAAGATGA AGCGATCGAGAATGACTCTGCGTTGGAAGAGGTAGATGAGGAGGAACTTGTGAGTCCTGGCGATAATTTTGGTTCCCATGGCGATGGTTCTCAGCTTGTA GACGAGAAAATGGAACAACTTGAAAGTGGGGGGATAAGTAGGGGAGAGCATAAGCTGCAACCTATCCTAAAGCCTCTTGAAATGGCAGAGGAACTTGAGA AGAAACAAGCTTCGACTGGCTTGCACTTGGAAGAAGGTGCTACTGCTCAGCCAATGAGGCTTGAGGGTGTTCGAAGAGGTTCCATTACTTTAGGATACTT TGACAATGATGCCAACAATATTATCTCTAAAACATTAGCATCTCAGGCTTTTAAGCGAGATCACGGTTCCCCTCAAGTCCTAGCTGTTCATCTTAACTAC ATTGCTGTTGGCATGTCCAAAGGTCTCGTTTTTGTCGTTCCGAGTAGATATTCTGCTCAAACTGTTGATAGCATGGACACGAAGATGCTGATGCTTGGCA TGCAAGGGGATCGATCTCATGTCCCGGTAACTTCCATCTGCTTCAATCATCCAGGGGATATGCTATTGGCCGGTTATGGAGATGGTCATGTTACTGTCTG GGATCTGCAGAAAGCATCTGTAGCTAAAGTTATTACTGGCGAGCATAATGCACCTGTAGTTCATGCATTCTTTATGGGCCAGGACTCTCAAGTAACTCGT CAATTTAAAGCTGTGACTGGCGATAGCAAAGGTGTGGTAGTGTTGCATTCATTCTCAGTGTTGCCCTTGCTGCACCGTTTCAACATTAAAACTCAGATGG TGTGTCTGTCATTTTCAATTTGTGCTCCCATTAAATTGAACTTGATGATACACTGTCTTCTTGATGGACAAAGAACGGGAGTTGTTTTGTCAGCCTCACC ACTTATCCACGAAGACTTCTCTGGAGCTGCTGTGCCATCTTCACCTGCTGATGGATCTATTTCATCCAGCAGCATTGGGAGCATGATGGGAGGTGTAGTT GGAGGAGATGCAGGTTGGAAACTTTTCAATGAAGGTTCTCCTCCAGCTGAAGAAGGTGTGGTCATATTCACCACTCATAAAACCGCACTGGTGATCAGAC TTACTCCTTCGGTGGAAGTATATGCAGAACTCTCCAGGCCAGATGGTGTTAGGGAAGGTTCAATGCCTTATACAGCATGGAAATCTACCCTGCAAACTCG CAGTTCACATACTGAAAATGTTCATGCAGTTGCTGCAGATAGAGTGTCCTTGCTAGCAGTCGCTTGGGATAAAAAAGTTCAAGTTGGAAAGTTAGTAAAG TCTGAGTTGAAAATATATGGAAGTTGGTTCCTTGATAGTGCAGCCATAGGTGTGGCTTGGTTGGACACTCATATGCTCGTGGTTCTCACGTTCACCCGGC AACTTTACTTATTCTCAAATGATGGTACCCTGATTCACCAGACTGGTTTCACTGTTGATGGTCCTGGAGGAGATGACCTTGTGGCTTATCATACTCAGTT CATGAATGTATTTGGAAACCCTGAGAAAGCATTCCACAACTGCATCGCTGTTAGGGGAGCTTCAGTTTACATTCTTGGAACCACACACCTACTTACTTCC CGCCTTCTTCCTTGGAAGGAACGTATACAGGTTTTGGGTGGAGCAGGAGACTGGATGGGTGCCTTGAATATGGGAATGACTTTTTATGATGGGCAAGCTC ATGGTGTTATTGACCTCCCTAGATCTCTGGATGCTGTTCAAGAAGCCATAATGCCATATCTGGTGGAGTTGCTATTATCATATGTAGATGAAGTATTTTC TTATATTTCAGTAGCCTTCTGCAACCAAATTGAAAAGGTGGAGCGGCAGGACGATTCGAGGAAAGAAAGCGGTTCTGTGCATTCTGAAATAAAAGAGCCG TTCACCCGTGTTGGTGGTGTTGCAGTGGAGTTTTGTGTTCACATACGGCGGACTGACTTACTTTTTGATGAAATTTACTCCAAGTTTAGAGCTGTTAAAC ACAGAGATACATTCTTGGAATTGTTAGAGCCTTATATATTGAGAGACATGCTTGGTTCTTTACCACCAGAGATCATGCAAGCACTAGTTGAGCATTACAG CAACAATGGGTGGTTGCAGCGTGTAGAACAATGTGTCCTTCATATGGATATCTCTTCTTTGGATTTTAATCAGGTGGTGAGGCTGTGCCGTGAGCATGGG CTTTTTGGCGCCCTAATCTATCTTTTCAATAAAGGGTTGGACGATTTCAAGGCACCTTTAGAGGAGTTGTTGAATGTTACACGAAATAGCCATGGGAAGG ATGCCACTGGTCTTGGGTATAGATTGCTTGTGTATTTAAAGTATTGCTTTTCTGGTCTAGCATTTCCTCCGGGCCATGGAGCTCTTCCTCCTATGCGTTT GCCTTCTCTTAGAGCGGAGCTTGTGCGGTTCTTGTTGGAAGTTTATGAAGCTGGAAAGCCACAGCCCACCTCAAGCTTGTCATCGGAAGGAAGATATCCG AATCTGTATCATCTCTTACAGTTGGATACAGAAGCTACGTTGGATGTTCTGAGATGTGCTTTTGTGGATGACGGTAGTCAAAAGCCTGATATTTCTTCAG ATAACAATTTTGAAGTACAGAAAGACCACCTCCTTAAACAAGATGCTACAGATGAAACTCAAAATCTATTAGTTCAGAACACAGTTGATGCTCTTGCACT AATTATCGAAACAGACTCATTAAGAGCTTCTGCTAAGATTGGTGATAATGGATCGGCAGAGGCATGGCCTTCAAAGGGAGATATAGGATATGTATTTGAA TTCATTGCTCAATATATCGCAAGTGGAAAAGCCCAAGTTTCGAAGAGGGTATTGAGTAAGATATTAGAGTACCTGACATCACAGAGTGCCGTCTCGCTTA TTATTCCCACACATACATCTGAAATTTTGAAGGGAAGAGAGAAGCGAGTGCTTTCCCTTTTGGAGGTAGTGCCTGATACCGACTGGAATTCATCGTATGT GTTGACACTCTGCGAGAATGCAAATTTCTATCAGGTATGTGGCTTAATTCATACCATGAGACGTCATTATCTTGCAGCCTTGGGTAGCTATATGAAAGAA GTGGGTGAACCCATTCACACATTCCTTTATATCAACAACATGTTGGAACAGTTGAGCAATTCTGAATTGAATGAGTTTCGATCTGCCATCATGCCTCGAA TCCCAGAGCTGCTTGGCTTGAGCAGAGAGGGGACACTCCTACTTGTCATCAACCATTTTTTGAAGGAAATGCCGCACATTCTTTCCATATTGCAATCACA TCCTGAAAGAATGTTTCTCTACTTGAAGACAGTAATTGAGGTTCACTTGTCTGGGACTCTAGATTTTTCGCAGTTATTAAAAGGTGCCAGCTTAGATGGT TTAATGGGAAGAAAACTGAAAGCTCAGCCTAAAGATTTTGAGGCTTATTTGGAAAGAATATCCGACTTTCCTAAGCGCATGCGGAATAATCCTGTTCCTG TCACCGATAATATGATTGAGCTTTATGTGGAGTTACTCTGTCGATATGAGCGCAATTCAGTTCTCAAATTCCTGGAGACTTTTGACAGCTACCGTGTAGA GCACTGTTTAAGCCTGTGCCAGGAGCATGGTATAATAGATGCTGCTGCATTTTTGTTGGAGAGAGTTGGTGACGTGGGATCTGCTCTTTCACTTATGCTT TCTGGACTCAATGACAAATTTGCGGAACTTGATCAAGAAGTGGCAACTTCACTGAAGGAAACTCCAGGCCGTCCCTCCAGAATTGAGCATTACAATACCG TTTTGAAGACAAAAGAGGACACTGCCAAATCCCTAATAGAGGATGACAGCTTCTATACCATGAATCTGTTAAAGAAGGGTGCATCTCATGGATATGCACC TCGAAGCCTTATGTGCTGTATATGCAGCTGCGCTCTCTCAAAGAACACTTCCAGCTTTCTAGTTCGGGTATTCAATTGCGGCCATGCAACCCATCTAGAA TGCGAATTTCTAGATACCGAGTCGTCAAGCAAAGGATCTCCATCGGGATGCCCCGTCTGTATGCTTAAGACAATGCACAGAAGCCTAGAAACAAATCAGA TCTCACAGATAATAGCTTGTTCAACAAGGTATCATCAAGACCTGAAAGGTCACAAGGAAGCGGCACCTTACTTCTGTACGAAGACTCGATGGACAGCGCT TACGGATTTCACCAAATGTCACGGGTAA
AA sequence Show only first row Show all	>Lus10030199 pacid=23153189 polypeptide=Lus10030199 locus=Lus10030199.g ID=Lus10030199.BGIv1.0 annot-version=v1.0 MTKNLTAAVAGEPSVELDLVSFLKLHSTSDDDDDPNPLPHRSLGEILNDSDSSPSPPSSPSSGLIRSPDLHPQPLNRAQSLGSGYNSGQSKSDSFARVRT SLLSTDRSWRGASAASTANRTLPSLFGGVRSNVKPGAALAAAAAASRSLPTPHAAAIKSKRASSVTAAALQKVLVSEELCSGGGGGFDPEIASTPSNGES VEAGSSEKEIAETNKDENEVKSEIEVDERAVNADSGVSRISDATISQTPDDAVAVSASRRYQDNEDEAIENDSALEEVDEEELVSPGDNFGSHGDGSQLV DEKMEQLESGGISRGEHKLQPILKPLEMAEELEKKQASTGLHLEEGATAQPMRLEGVRRGSITLGYFDNDANNIISKTLASQAFKRDHGSPQVLAVHLNY IAVGMSKGLVFVVPSRYSAQTVDSMDTKMLMLGMQGDRSHVPVTSICFNHPGDMLLAGYGDGHVTVWDLQKASVAKVITGEHNAPVVHAFFMGQDSQVTR QFKAVTGDSKGVVVLHSFSVLPLLHRFNIKTQMVCLSFSICAPIKLNLMIHCLLDGQRTGVVLSASPLIHEDFSGAAVPSSPADGSISSSSIGSMMGGVV GGDAGWKLFNEGSPPAEEGVVIFTTHKTALVIRLTPSVEVYAELSRPDGVREGSMPYTAWKSTLQTRSSHTENVHAVAADRVSLLAVAWDKKVQVGKLVK SELKIYGSWFLDSAAIGVAWLDTHMLVVLTFTRQLYLFSNDGTLIHQTGFTVDGPGGDDLVAYHTQFMNVFGNPEKAFHNCIAVRGASVYILGTTHLLTS RLLPWKERIQVLGGAGDWMGALNMGMTFYDGQAHGVIDLPRSLDAVQEAIMPYLVELLLSYVDEVFSYISVAFCNQIEKVERQDDSRKESGSVHSEIKEP FTRVGGVAVEFCVHIRRTDLLFDEIYSKFRAVKHRDTFLELLEPYILRDMLGSLPPEIMQALVEHYSNNGWLQRVEQCVLHMDISSLDFNQVVRLCREHG LFGALIYLFNKGLDDFKAPLEELLNVTRNSHGKDATGLGYRLLVYLKYCFSGLAFPPGHGALPPMRLPSLRAELVRFLLEVYEAGKPQPTSSLSSEGRYP NLYHLLQLDTEATLDVLRCAFVDDGSQKPDISSDNNFEVQKDHLLKQDATDETQNLLVQNTVDALALIIETDSLRASAKIGDNGSAEAWPSKGDIGYVFE FIAQYIASGKAQVSKRVLSKILEYLTSQSAVSLIIPTHTSEILKGREKRVLSLLEVVPDTDWNSSYVLTLCENANFYQVCGLIHTMRRHYLAALGSYMKE VGEPIHTFLYINNMLEQLSNSELNEFRSAIMPRIPELLGLSREGTLLLVINHFLKEMPHILSILQSHPERMFLYLKTVIEVHLSGTLDFSQLLKGASLDG LMGRKLKAQPKDFEAYLERISDFPKRMRNNPVPVTDNMIELYVELLCRYERNSVLKFLETFDSYRVEHCLSLCQEHGIIDAAAFLLERVGDVGSALSLML SGLNDKFAELDQEVATSLKETPGRPSRIEHYNTVLKTKEDTAKSLIEDDSFYTMNLLKKGASHGYAPRSLMCCICSCALSKNTSSFLVRVFNCGHATHLE CEFLDTESSSKGSPSGCPVCMLKTMHRSLETNQISQIIACSTRYHQDLKGHKEAAPYFCTKTRWTALTDFTKCHG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	0	1
AT1G58230			binding (.1)		Lus10042866 [exp]	1.7	0.9356
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	4.0	0.9043
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	5.1	0.9171
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	6.5	0.8841
AT5G36930			Disease resistance protein (TI...		Lus10023272 [exp]	6.7	0.8886
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	8.0	0.8876
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	8.0	0.8940
AT5G36930			Disease resistance protein (TI...		Lus10004747 [exp]	8.9	0.8928
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	9.5	0.9012
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	11.7	0.9053

Compare expression of checked genes

Lus10030199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.