Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05600 555 / 0 EMB3101 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G09060 165 / 4e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 163 / 2e-42 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 163 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 156 / 3e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 159 / 4e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 156 / 8e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G20090 158 / 9e-41 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02060 153 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48810 151 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002681 [exp] 271 / 2e-88 AT1G05600 141 / 1e-40 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002682 [exp] 196 / 7e-60 AT1G05600 129 / 3e-36 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005989 [exp] 169 / 1e-45 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038377 [exp] 164 / 5e-43 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 165 / 1e-42 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 162 / 5e-42 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009023 [exp] 160 / 1e-41 AT3G48810 543 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 161 / 2e-41 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 158 / 2e-41 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179300 [exp] 634 / 0 AT1G05600 649 / 0.0 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G057900 [exp] 175 / 4e-48 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 174 / 4e-47 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G108500 [exp] 168 / 1e-45 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 167 / 9e-44 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 163 / 1e-42 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 161 / 2e-41 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 157 / 1e-40 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 157 / 3e-40 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 156 / 4e-40 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10030200 pacid=23153127 polypeptide=Lus10030200 locus=Lus10030200.g ID=Lus10030200.BGIv1.0 annot-version=v1.0 ATGAGCATCAGCTCCGTGAGCAAGACTTACAGGATTGGGATAGCCATGAGTGTACGGTGGCCGAGGGTTCTAACCCCGACGTACCTTTCCCAAATCATAA GGAATCAGAAAAACCCTCTGAAAGCACTGCAGCTCTTCGAGAACTCAAAAACTAGGTTTCCAAACTACCGCCACAACGGCCCCGTTTATGCCACCATGAT CGATCTCCTAGGCAAATCCGGCAAATTCCACGAAATGAAACAAGTGATCAACAAAATGAGAGACGATTCATGCGAATGCAAAGACATAGTATTCGCCAAT GCAATCAACACCTACGCTGCTGCAGGAATGATCGATGAAGCCGTATGTCTATTCAAGGACATCCCAAACTTCAACTGTGTCAACTGGACTGAATCTTTCA ACACATTGCTAAAGATCATGGTGAAGGAGTCTCGGCTCGAATCGGTCCACCGTCTGTTCGTGGATTACTCTTGTGGTTGGGAAGTGAAATCCAGGGTTTG TTCGTTGAATTTGCTAATGGAAGCTCTTTGTGAGCTTGGGAAATCAGACCTTGCGTCGAATGTGTTCCAGGAGATGTACTATCAAGGATGCTATCCGGAT CGGGATAGCTACCGGATTCTGATGACCGGACTCTGTAAAGATGGAAAGCTGAGCGATGCTGTGCATTTGCTGTATTCGATGTTTTGGAGGATTTCTCAGA AAGGAAGTGGGGAGGATATTGTGATATACAGAATCCTTTTGGATGCTCTGTGTGACAATGGACAGATTGAGGAAGCGTTCATGATCCTTGGTAAGATCCT GAAGAAAGGACTCAAGTCACCTAAAGCTCGTCAACCCCAACTCGATCTAACTGGCTTCAGCCGTAGTGTTGAAGATGCTAAGAAGCTGACTCATGAAGCT TTAATCAGAGGCTGTGTTCCGAGCTCGGCGAGTTATACTTTAATGGCGCGTGATTTCTACAAAGAAGGTGACGTTGATCAAGCTGACAGGGTGCTTGATG TGATGCTGGATAGAGGGTTTAGGCCGTCTGTTCGAAGCTACGAGGCGAAGATGGTGGCTTTGTGTGATGCAGGAAGAATCCGGGATGCTGTTCATGTGAT TGACGTGGAGATGGTGAGGGCGAATTGTTTGCCAACGGTACGAGTGTATAATTCTCTACTGAAAGGACTGTGTGAGAACGGGAATTCGGTGATGGGTGTC GAGTATCTTGATAAGATGGGGAAGCTGGTGGGGTGTGTGGCTGACTGTGAAAGCTATGCGACTTTGGTGCGTGGGTTGTGCAAGGAAGGGAGGTTTGTCG AGGCGAGCGGTGTTTTGGAACGGATGCTGAGGAGGTGTTTTCGGCCTGAGGTTGGTGTGTATGAGATGGTTGTGCATGGTCTTTGTCGGGTGGGTAGACG GTATGATGCGGTTGCGTTGCTGGAGGAGATGATTGATCAAGGTGAGGTGCCGGATGTTTCGCTGTGGGGGTCCTTGGTTGCTTCTGCTTGTTATAATATG GCTGATGTTGATGTTTGTTCTCAGAGAGTTCTGCAGATTAGCCACTTGTTTGTAAGCTCGGAAACAATGTCGGTCGGAGAAATCGCTTGCAGTTACGCCA TCATGATCCTTCACGACGAAGGCATCCCCATCACCTCGGACAAAATCAGCACTCTGGTTAAGGCTGCTAACGTCAACTGCGAGTCCTACTGGCCCAGTTT GTTCGCCAAGTTGGCCGAGAAGAGGAACGTCGAGGATCTCATCATGAACGCTTGCGCTGGAGGCGGCGGCGGTGTTGCTGCCGTCGCTGCTCCGGCTGGT GGTGCCGCTGCTCCTGCAGCTGCAGCCGCCCCCGCTGCTGAAGAGAAGAAGGAGGAGGCGAAAGAGGAGAGTGACGAAGACATGGGTTTCTCCTTGTTTG ATTAG
AA sequence Show only first row Show all	>Lus10030200 pacid=23153127 polypeptide=Lus10030200 locus=Lus10030200.g ID=Lus10030200.BGIv1.0 annot-version=v1.0 MSISSVSKTYRIGIAMSVRWPRVLTPTYLSQIIRNQKNPLKALQLFENSKTRFPNYRHNGPVYATMIDLLGKSGKFHEMKQVINKMRDDSCECKDIVFAN AINTYAAAGMIDEAVCLFKDIPNFNCVNWTESFNTLLKIMVKESRLESVHRLFVDYSCGWEVKSRVCSLNLLMEALCELGKSDLASNVFQEMYYQGCYPD RDSYRILMTGLCKDGKLSDAVHLLYSMFWRISQKGSGEDIVIYRILLDALCDNGQIEEAFMILGKILKKGLKSPKARQPQLDLTGFSRSVEDAKKLTHEA LIRGCVPSSASYTLMARDFYKEGDVDQADRVLDVMLDRGFRPSVRSYEAKMVALCDAGRIRDAVHVIDVEMVRANCLPTVRVYNSLLKGLCENGNSVMGV EYLDKMGKLVGCVADCESYATLVRGLCKEGRFVEASGVLERMLRRCFRPEVGVYEMVVHGLCRVGRRYDAVALLEEMIDQGEVPDVSLWGSLVASACYNM ADVDVCSQRVLQISHLFVSSETMSVGEIACSYAIMILHDEGIPITSDKISTLVKAANVNCESYWPSLFAKLAEKRNVEDLIMNACAGGGGGVAAVAAPAG GAAAPAAAAAPAAEEKKEEAKEESDEDMGFSLFD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	0	1
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	1.4	0.8893
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	2.0	0.8751
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	2.0	0.8432
AT5G24510			60S acidic ribosomal protein f...		Lus10002680 [exp]	2.4	0.8735
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	2.8	0.8315
AT1G71730			unknown protein		Lus10042772 [exp]	4.2	0.7809
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	6.2	0.7928
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	6.5	0.8356
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	8.4	0.8200
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	9.0	0.8209

Compare expression of checked genes

Lus10030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.