Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46780 198 / 4e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 160 / 3e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G76460 158 / 4e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G33470 154 / 4e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 145 / 8e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G78260 141 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 139 / 5e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G11412 132 / 1e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G53680 125 / 7e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G54770 127 / 1e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002684 [exp] 460 / 5e-164 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041423 [exp] 142 / 5e-40 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036503 [exp] 141 / 5e-40 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039151 [exp] 120 / 1e-31 AT1G33470 182 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 94 / 2e-21 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 89 / 3e-19 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 87 / 8e-19 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 85 / 4e-18 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 85 / 4e-18 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179100 [exp] 252 / 1e-82 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G105101 [exp] 245 / 2e-79 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G094400 [exp] 164 / 2e-48 AT1G33470 257 / 3e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.019G068400 [exp] 162 / 9e-48 AT1G33470 246 / 7e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G022100 [exp] 161 / 9e-48 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G256700 [exp] 158 / 4e-46 AT1G76460 335 / 5e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G004600 [exp] 158 / 4e-46 AT1G76460 377 / 9e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G005500 [exp] 152 / 2e-44 AT2G46780 145 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G098100 [exp] 151 / 9e-44 AT1G78260 164 / 5e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G216800 [exp] 141 / 4e-40 AT3G54770 216 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030202 pacid=23153173 polypeptide=Lus10030202 locus=Lus10030202.g ID=Lus10030202.BGIv1.0 annot-version=v1.0 ATGTCTCAGCAGCAAAGGCAATTCCCAATAGGGAATTACAACATGAACATCGACACAACTTTCACCAAGCTGTTCGTTGGAGGGTTGGCTTGGGAGACTC AGAGGGAAACTTTGAGGCGTTACTTTGAGCAGTTTGGGGAGATCATTGAAGCTGTTGTGATCACTGACAAGAACACTGGCAGATCCAAAGGCTACGGCTT TGTTACGTTTAAGGATCCAGAGTCAGCTATGAGAGCTTGTCAAAACCCGTCTCCTGTGATTGATGGAAGGAGGGCAAACTGCAACCTTGCTTCCCTTGGT GCCACTACAAAACCTACTACTCGTCCTAATTCATTCCCTCTTCAACATGGTGGAAGGTTTAGAGGAGTAGAGGCTGGATTGGTGGCTGCTGCACCTGCTT TTCAACCTTCTTCAGCTGCTGCTGCATCCTACATTCCTCAACCCACCGGTCAATACACATTTCCTTATTCAGCTTATGGGTACACTGGATATCCACAAGA GACTGCCGTTTATCATCCCATGAGCTATTATGGTGTTTATGGAGGTGGTCATCATCATCAGCATCAACATCAACATCAACAAGTGTCTCCATATTATGCG GCTGGAGCACCTGGAGGGATGCCATTCCACAATTTGTATCCTTTCTACACTCAGTATGCTCAGGGAGGAAGTAGCAGTAGTAACCAAGCTCATGGCTATG GAGGAGGAGTAGGAGGAGGTGTTCAATACCCTCAGCATCAAGCTCAAGTTGTGCAATTTACGCCGTACTTGCCTCAGCATCACTATGCATCTTCCGGAGT CCTGTCCATGCCGCCTTCTCCTGCTGCTGCTCAACCTCTGCCTATTACAGTTACCCCTACAGCCTTGCCAACGACAACAACGACAACGGCAACTTCTTCA TCCACGGTCGCAATGCCTGCTCAGACAACAGCACCAACATCGTCAGGAGCAGCTTCTGATCAGACTTCATCATCAAGCAAATGA
AA sequence Show only first row Show all	>Lus10030202 pacid=23153173 polypeptide=Lus10030202 locus=Lus10030202.g ID=Lus10030202.BGIv1.0 annot-version=v1.0 MSQQQRQFPIGNYNMNIDTTFTKLFVGGLAWETQRETLRRYFEQFGEIIEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLG ATTKPTTRPNSFPLQHGGRFRGVEAGLVAAAPAFQPSSAAAASYIPQPTGQYTFPYSAYGYTGYPQETAVYHPMSYYGVYGGGHHHQHQHQHQQVSPYYA AGAPGGMPFHNLYPFYTQYAQGGSSSSNQAHGYGGGVGGGVQYPQHQAQVVQFTPYLPQHHYASSGVLSMPPSPAAAQPLPITVTPTALPTTTTTTATSS STVAMPAQTTAPTSSGAASDQTSSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	1.0	0.9604
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	1.4	0.8446
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	1.7	0.8408
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	4.5	0.7947
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10029661 [exp]	4.8	0.7661
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	5.5	0.8264
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027916 [exp]	6.7	0.7819
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	8.4	0.8232
					Lus10008645 [exp]	9.5	0.7399
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	14.3	0.7451

Compare expression of checked genes

Lus10030202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.