Plant FIBer expression Database

Lus10030204 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61920 44 / 2e-05 unknown protein
AT1G64700 40 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002686
[exp]
132 / 2e-40 AT3G61920 57 / 2e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G178900
[exp]
59 / 9e-11 AT3G61920 142 / 6e-43 unknown protein
Potri.014G104900
[exp]
57 / 4e-10 AT3G61920 130 / 4e-38 unknown protein
Potri.011G153000
[exp]
49 / 2e-07 AT1G64700 160 / 1e-49 unknown protein
Potri.001G448500
[exp]
40 / 0.0004 AT1G64700 154 / 3e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10030204 pacid=23153210 polypeptide=Lus10030204 locus=Lus10030204.g ID=Lus10030204.BGIv1.0 annot-version=v1.0
ATGGGCAACTGCCTCTTCAACGGCGTACCGGACGAGGCCGCCGTAAGCAAGGACGTCACGGACATCATCGAAGTCGTCGCACCAAACGGCGCTGCATCCG
CCTCGCCGGAGGTGATATGGAGGTACAGCGGGAGTGGGGTGTGGAAGGTGAAGCTGGTGATAAGTGCGGCGGAGCTGGCGGAGATACTGGCGGAGGATTC
ACGGACGGAGGAGCTGATTGAAAGCGTCAGGACGGTGGCGAAAGGTGGCGGCCGGAAGAAGAATAGTATTAGTGGCGGAAATGGCGTCGTTTCGGAGGAT
TGTCGTGACGAGCTGAGCGGTAGTAATAGCCGAAAGCATCGCCTTTATAGAAAAAAAATATATCTCTCCGGTTGCGGAGAGATCCTTGGATTCGGAACCG
TAGTACTTGTCGTTGTTAAAGTAGCTCTTGCTGAAGTAGTCGTTGCCGTTGTTACTCTCGCCATTTGCGACCGGGAGAGCAGATTCTCCAGCAGCGAGCT
TGGCTCCGGCGGTGACGCAATAACGGTGGTGGGGTTGGCGGTTTCGGCGGAGAACTTGTTGAAAAAGTGGCTCTAG
AA sequence
>Lus10030204 pacid=23153210 polypeptide=Lus10030204 locus=Lus10030204.g ID=Lus10030204.BGIv1.0 annot-version=v1.0
MGNCLFNGVPDEAAVSKDVTDIIEVVAPNGAASASPEVIWRYSGSGVWKVKLVISAAELAEILAEDSRTEELIESVRTVAKGGGRKKNSISGGNGVVSED
CRDELSGSNSRKHRLYRKKIYLSGCGEILGFGTVVLVVVKVALAEVVVAVVTLAICDRESRFSSSELGSGGDAITVVGLAVSAENLLKKWL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61920 unknown protein Lus10030204
[exp]
0 1
AT5G50740 Heavy metal transport/detoxifi... Lus10038785
[exp]
5.3 0.8563
AT1G61600 Protein of unknown function (D... Lus10035379
[exp]
5.7 0.8740
AT1G11570 NTL NTF2-like (.1.2) Lus10020061
[exp]
6.2 0.8758
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10026198
[exp]
6.2 0.8720
AT5G17860 CAX7 calcium exchanger 7 (.1) Lus10013635
[exp]
9.5 0.8098
AT5G02380 MT2B metallothionein 2B (.1) Lus10016546
[exp]
10.2 0.8454
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10042470
[exp]
13.0 0.8391
AT5G18850 unknown protein Lus10033997
[exp]
13.9 0.8523
AT4G10300 RmlC-like cupins superfamily p... Lus10035659
[exp]
14.3 0.8563
AT3G61920 unknown protein Lus10002686
[exp]
16.5 0.8167

Lus10030204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.