Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 652 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 631 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 629 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 618 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 610 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 468 / 2e-159 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 289 / 3e-94 FAD-dependent oxidoreductase family protein (.1) AT3G47930 58 / 1e-08 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002688 [exp] 1084 / 0 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 651 / 0 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 595 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 562 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 499 / 1e-172 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 468 / 4e-159 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010106 [exp] 147 / 1e-41 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 157 / 4e-40 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10035411 [exp] 59 / 7e-09 AT3G47930 939 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178300 [exp] 693 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 684 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 476 / 2e-162 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 62 / 1e-09 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.016G064800 [exp] 43 / 0.0005 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10030206 pacid=23153156 polypeptide=Lus10030206 locus=Lus10030206.g ID=Lus10030206.BGIv1.0 annot-version=v1.0 ATGGGTACATTTCACTTCTTTCTACAGCTCCTAATTATACTATGGACCAATCTGCTGGCGATCGGAAACTGCAGCCTGCCGCCGGAGCCGATCAGATGCT CGCCGGACTGCACGCTGACCAACACGTTCGGCAATTTCTCCGACCGGAGTATATGCAGAGTGGGCAGAGTGGTGTACCCGATGTCGGAGGAGGAGCTGAT ATCGCTGGTGGCGACGGCGACTAAGAAGCGTAGAAAGATGAAAGTCGCCACGCGCTACTCCCACAGCGCGCCCAAACTCGCCTGCCCGGGTGGCGACGAC GGGCTCGTGATCAGCACGCGGAATTTGAATAAGATCCTCCGGGTTGATAAAGAGGCGATGACGATTACGGTGGAGAGTGGTGTGTTGCTCAAGGAAATCG CCGGCGAGGAGTTCCCCGGCGACGAGCCGAAGTCGGGATTGGCACTGCCGAACTTCCCGTATTATTGGGGGATGACTATCGGGGGCGTGATCAGCACGGG CTCCCACGGCAGTTCATTCTGGGGCAAAGGCGGCGCGGTGCACGACTACGTGGTCGCGTTGACCATCGTCAGCCCAGGGAAGCCGCAGGAAGGGTCGGCG GTGATAAGGGATCTCGACGAGGAGGAATTCGCAGACGAATTGAACGCGGCGAAGGTGTCGATCGGGGTACTAGGGGTGATCTACAAGGTTACTTTGAAAC TGGAACCTATGTTTAAGAAGAAAGTATTGTTCGATTCGAAGAGCGATTCGGATTTGGGCGAGGAAGCGATCAGGTTCGGGAAGAATTACGAGTTTGGGGA CATCACTTGGTATCCGTTTCAAGGCAAGGCGGTTTATCGGAGGGACAGGAGGTGCGCTGTTAATGTTCCGGGTGACGGTGTATGTGATTACATTCCATTT CGAACCATTGAGTCTAACGCTATGGCTTCGAGGAGAGCTATCGATGATGAGATTGAAGCCAGTAGGGATGTTGATCAAAGGTGCGAGCTAGCCCAACAAG TTGCTGAAACCTTTTCAGATGTGGGTTATGGATTCACCAATGATGGCTCTCATTTCGAAGGATATCCGATCGTCGGGTACCAAAACAAGCTCCAATCTTC AGGATCGTGTTACGAAAGCCCTGCAGACGGGTTGAAGACGACATGCTCATGGGACTCAAGAATCGACGGGGCCTTCTTCTTCGAGACAAGCTTCAGCATT GCCTTGCCAAACGCCACAAACTTCATCAACGACGTACTCAAACTAGTCAAGCTGAACCCTAAGGCCGCCTGCGTTATCGACCAGCACAACGGGATCTTGA TCCGTTACTTGAACAAATCGACGGCGTACCTAGGCAGGCCGGAGGAGTCTCTGGTGTTCGACTTCAGCTACTACCGAAGTAGGGACCCCCTGGTTCCTAG ACTGTTCGAGGATCTGATGGAAGAGATAGAGCAGATGGGGATTAGGAAATATGAGGGGCTGCCGCATTGGGGTAAAAACCGGGTTTTGGCCTTCGATGGG GTGATGGAGAAGTACAAGGAGAATGGTGGAAAATTTTTGGAAGTGAAGAAGTTGTATGATCCTATAGGGTTGTTTTCTAGTGAGTGGAGTGATCAAATTC TTGGGTTGGGAGATGGTGGTGAAGTGGCTATTTACAAGGAAGGGTGTGCTTTGGATGGATTGTGTGTTTGCAAAGAGGATGTTCATTGTGCTCCTAGTGA AGGGTATTTTTGTACACCGGGAAAAGTCTTTGAGGATGCTAGGGTTTGTACTTACGTATAA
AA sequence Show only first row Show all	>Lus10030206 pacid=23153156 polypeptide=Lus10030206 locus=Lus10030206.g ID=Lus10030206.BGIv1.0 annot-version=v1.0 MGTFHFFLQLLIILWTNLLAIGNCSLPPEPIRCSPDCTLTNTFGNFSDRSICRVGRVVYPMSEEELISLVATATKKRRKMKVATRYSHSAPKLACPGGDD GLVISTRNLNKILRVDKEAMTITVESGVLLKEIAGEEFPGDEPKSGLALPNFPYYWGMTIGGVISTGSHGSSFWGKGGAVHDYVVALTIVSPGKPQEGSA VIRDLDEEEFADELNAAKVSIGVLGVIYKVTLKLEPMFKKKVLFDSKSDSDLGEEAIRFGKNYEFGDITWYPFQGKAVYRRDRRCAVNVPGDGVCDYIPF RTIESNAMASRRAIDDEIEASRDVDQRCELAQQVAETFSDVGYGFTNDGSHFEGYPIVGYQNKLQSSGSCYESPADGLKTTCSWDSRIDGAFFFETSFSI ALPNATNFINDVLKLVKLNPKAACVIDQHNGILIRYLNKSTAYLGRPEESLVFDFSYYRSRDPLVPRLFEDLMEEIEQMGIRKYEGLPHWGKNRVLAFDG VMEKYKENGGKFLEVKKLYDPIGLFSSEWSDQILGLGDGGEVAIYKEGCALDGLCVCKEDVHCAPSEGYFCTPGKVFEDARVCTYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10030206 [exp]	0	1
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10008931 [exp]	2.2	0.7225
					Lus10004506 [exp]	2.8	0.6916
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10005917 [exp]	6.0	0.6483
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10007013 [exp]	22.3	0.6198
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029023 [exp]	33.9	0.5258
					Lus10001746 [exp]	40.7	0.5764
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	48.9	0.5566
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	49.9	0.5563
					Lus10017802 [exp]	59.4	0.5365
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	66.4	0.5033

Compare expression of checked genes

Lus10030206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.