Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00830 558 / 0 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 376 / 1e-126 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G28390 141 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 112 / 4e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22760 88 / 2e-18 PAB3 poly(A) binding protein 3 (.1) AT1G71770 85 / 3e-17 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT3G16380 79 / 1e-15 PAB6 poly(A) binding protein 6 (.1) AT5G54900 77 / 4e-15 ATRBP45A RNA-binding protein 45A (.1) AT2G23350 78 / 5e-15 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G07810 76 / 2e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002689 [exp] 775 / 0 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10034195 [exp] 395 / 2e-134 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 394 / 8e-134 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021351 [exp] 391 / 2e-132 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017026 [exp] 246 / 9e-77 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10033990 [exp] 129 / 8e-32 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 123 / 8e-30 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028162 [exp] 121 / 3e-29 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010042 [exp] 85 / 4e-17 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104500 [exp] 605 / 0 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 586 / 0 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.006G212400 [exp] 411 / 3e-140 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 406 / 3e-138 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 399 / 3e-135 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 397 / 2e-134 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G116400 [exp] 139 / 3e-35 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 132 / 6e-33 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 125 / 1e-30 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 119 / 1e-28 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030207 pacid=23153033 polypeptide=Lus10030207 locus=Lus10030207.g ID=Lus10030207.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGTGGAGAAGTCGACGAGCGAGTGGATTTCGAAGAAGACAACTACATGGAAGATGACGATGTTGAAGAGCAAGACAGACATGTCATCGAAG ATGACGACGATGAGGATTCGAATCCAAAAGAGGAAGAACAGTCGCCACCACAGGACGACGGGGATGATGAGGAAGTAGATGTCGAAGCTGATGAACCTGA CGAAGAGAAGCAGCCAGGGGGCGATTCTTCGATCAACGACGAGGAAAGGGAGAAGCATGCTCAACTCCTCGCCCTCCCTCCCCACGGATCGGAGGTTTTC ATCGGAGGCCTTCCTAAGGATGTTGTAGAAGATGATTTGACTGAGCTTTGTGAAGCAGTTGGTGAACCTCTTGAGATAAGGTTGGTGAAGGATAAAGATA CTGGTGACAGCAAAGGTTTCGCCTTTGTATCTTTCAACTCAAAGGAAGTTGCTCAGAAGGTTATTGATGAGTTGCATAACAAACAATTCAGGGGTAAAAC ATTGAGATGCTCTCTATCTGAAACTAAGAACAGGTTGTTTGTTGGAAATATTCCCAAGATCTTAACAGAGGATCAGTTTAGGAAAGTAATCGAGGATGTC GGCCCCGGTGCAGAAGTCATTGAACTCATTAAGGATCCTGTGAATCCTAGCCGTAATCGTGGATTCGCGTTTATACTGTACTACAACAATGCATGCGCTG ATTATTCGAGGCAGAAGATGCTGAGCTCGAGTTTCAAGCTTGACGGAAATACCCCTACCATCAGCTGGGCTGATCCAAAGGCGAGCCCTGATCATTCTGG TGCTTATGCCCAGGTTAAGGCTCTGTATGTCAAGAACATTCCGGAAAACACAAGCACTGAGAAACTGAAGGAGTTGTTTATACACCACGGGGAAGTTACG AAAGTTGTTATGCCGCCTGGGAAAGCTGGGAAACGAGACTTCGGATTCATCCACTTTGCTGACAGGGCGAGCGCGTTGAAAGCTGTCCGAGATACAGAGA AGTATGAAATCGATGGCCAGGCGTTGGAGGTTGTTTTGGCTAAGCCGCAGACCGATAAAAGATCGGACGGAGCATATCTCTACGGTGGTGCTGGTCTTCC TCCTCCACATGTTGCATCTCCGTCTTACGGTGCATTCGCTCCAAATCCTTATATGGGTGCCGGATTCGGTGCAGCCTCGAGTTTTCAGCAGCCGATGATA TATGGTCGAGGTCCGATGCCTTCTGGGATGCAGATGGTGCCTATGGTGCTACCGGATGGTCGAGTCGGCTATGTTCTTCAGCAGCCGGGAGTGCAACTGC CGCAGTCGCGCCCACCGAGGAGAGGTGATAGGGGGAATGGCATGAGTGGCTCTGGCAGGGGAGGAAGCAACGGAGATGATGGCAACCGTGGCCGAAGATA CCGGCCATACTAG
AA sequence Show only first row Show all	>Lus10030207 pacid=23153033 polypeptide=Lus10030207 locus=Lus10030207.g ID=Lus10030207.BGIv1.0 annot-version=v1.0 MAEGGEVDERVDFEEDNYMEDDDVEEQDRHVIEDDDDEDSNPKEEEQSPPQDDGDDEEVDVEADEPDEEKQPGGDSSINDEEREKHAQLLALPPHGSEVF IGGLPKDVVEDDLTELCEAVGEPLEIRLVKDKDTGDSKGFAFVSFNSKEVAQKVIDELHNKQFRGKTLRCSLSETKNRLFVGNIPKILTEDQFRKVIEDV GPGAEVIELIKDPVNPSRNRGFAFILYYNNACADYSRQKMLSSSFKLDGNTPTISWADPKASPDHSGAYAQVKALYVKNIPENTSTEKLKELFIHHGEVT KVVMPPGKAGKRDFGFIHFADRASALKAVRDTEKYEIDGQALEVVLAKPQTDKRSDGAYLYGGAGLPPPHVASPSYGAFAPNPYMGAGFGAASSFQQPMI YGRGPMPSGMQMVPMVLPDGRVGYVLQQPGVQLPQSRPPRRGDRGNGMSGSGRGGSNGDDGNRGRRYRPY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	0	1
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	1.7	0.7674
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	7.1	0.7170
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	8.4	0.7270
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	11.6	0.7603
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	13.0	0.7191
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	15.2	0.7341
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	16.1	0.7040
AT5G65540			unknown protein		Lus10035950 [exp]	21.9	0.7170
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	23.3	0.7573
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	26.3	0.7308

Compare expression of checked genes

Lus10030207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.