Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002690 [exp] 79 / 3e-19 AT2G46735 54 / 9e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178100 [exp] 42 / 1e-05 AT2G46735 61 / 1e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030208 pacid=23153124 polypeptide=Lus10030208 locus=Lus10030208.g ID=Lus10030208.BGIv1.0 annot-version=v1.0 ATGTGGACGTCGATCCTTCAACCCACACCATTGGTTTCTCCTCCGACACTCACCACCGTCCCCACCAAACCCACCGCTTGCTCCGTCTCCCTTCACCGTC GGAGCCTCAGCCACCGATTCCACTCTTCCTCAGTTCCTGAACAGGCACAGGAGACGGAGGAGGAAGAGAAACAAGAGAGCAGCAGCAGACTACGCGGTTT GGACGTGCTGTGGGCTATGCAGAAGGCAACCGCCGAGAAGAACAAGCTCAAGACTCGGAAGAAAAACAAGTCACCATCATCGTCATCCGCCGCCAGAATC CAATTGCCGCCAGAGGATTACAGCAATGTTAAGCCGCTGTGCGTGAAGAGAGAGTGGGGCGTGAAATTGGAAGAGCTAGAGAGCCGTCTCCGCCAGCTCT CTCAGGAGGCCAAATGA
AA sequence Show only first row Show all	>Lus10030208 pacid=23153124 polypeptide=Lus10030208 locus=Lus10030208.g ID=Lus10030208.BGIv1.0 annot-version=v1.0 MWTSILQPTPLVSPPTLTTVPTKPTACSVSLHRRSLSHRFHSSSVPEQAQETEEEEKQESSSRLRGLDVLWAMQKATAEKNKLKTRKKNKSPSSSSAARI QLPPEDYSNVKPLCVKREWGVKLEELESRLRQLSQEAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46735			unknown protein		Lus10030208 [exp]	0	1
AT2G46735			unknown protein		Lus10002690 [exp]	1.0	0.9480
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10014015 [exp]	2.0	0.9196
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	7.1	0.8668
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	8.2	0.9045
AT3G25805			unknown protein		Lus10022435 [exp]	9.0	0.9187
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10006189 [exp]	9.2	0.8908
AT1G44000			unknown protein		Lus10029738 [exp]	9.4	0.8834
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	11.4	0.8987
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	14.5	0.8895
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	14.5	0.8609

Compare expression of checked genes

Lus10030208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.