Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01120 845 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G26640 667 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 656 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G19440 644 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 629 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT5G43760 624 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G26250 601 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G68530 586 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 580 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G46720 578 / 0 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002691 [exp] 1046 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 962 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10010108 [exp] 944 / 0 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10043300 [exp] 646 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 645 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10026345 [exp] 643 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 641 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10006637 [exp] 640 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10001657 [exp] 639 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178000 [exp] 894 / 0 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 857 / 0 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.018G032200 [exp] 679 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 677 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 672 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 652 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.004G155600 [exp] 650 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 650 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G079300 [exp] 650 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 643 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10030209 pacid=23152981 polypeptide=Lus10030209 locus=Lus10030209.g ID=Lus10030209.BGIv1.0 annot-version=v1.0 ATGGATAAGGAAAGCCTGACTGCGGAGATGGCGTTCAAAGACTCCACCTTTGCGGTCATAAAGATCCGACAACGACTGCCTGATTTTCTCAAGTCCGTAA AGCTCAAGTACGTCAGGCTAGGGTACGGATACACTTGCAATGCAGCTACCATCATTTTGTTCACCATCTTTGTTCCTTTGTTATTGACTACAGTGGTTCA GTTCGTCGGTTTGGAGCTGGATCGGTTCAACCAGATTTGGTCAATCCAGACTTTTCAGCTCCAGAACATCGATGAAGCCACTACCCTAGCCGGTTCGGCC ATCCTCCTCTTTTTATTGGGCCTCTACTGGGCCAGACGGTCCAGGGCCATCTACCTGATGGACTTCGCTTGTTATAAGCCCGAAAATGAGCGCAAGATAT CGGTCGATTCCTTCCTCGAGATGAGTGAGGAGAGCGGGTCGTTCGTGGACGAGACCCTCAACTTCCAAACCCGCGTAGCGAAACGTTCGGGGCTTGGAGA CGAGACGTACTTGCCACGTGGCATCACGTCCCGCCCGCCTAGCCTAAACATGGCAGAGGCTCGAGCGGAGGCCGAAACCGTGATGTTCGGAGCTCTCGAT GAGCTCTTCGGGAAGACAGGTGTCAAACCCAAGGACATAGGGATCCTCATTGTGAACTGCAGCTTGTTCAATCCCACCCCTTCACTTTCCGCCATGATTG TCAACCACTACAAGCTACGTACCGACATCAAGAGCTACAACTTGGGCGGAATGGGCTGCAGCGCTGGGCTCATATCCATAAACCTGGCCCAAGACCTCCT CAAGGCCAACCCGAGCACGTACGCCGTCATTTTGAGCACGGAGAACATCACCTTAAACTGGTACTTCGGCAACGACCGCTCTATGCTCCTCTGCAACTGC ATCTTCCGAATGGGCGGGGCCGCCGTCTTACTCTCCAACAAGGCGCGTGACCGTTCTCGCTCCAAGTACCAACTCGTCCACACCGTCCGGACCCACAAGG GCGCCGACGAGAGAAGCTACAACTGCGTCTACCAGAAGGAAGACGAAAACGGCACCGTTGGGGTTTCGCTGGCGCGTGAGCTTATGGCGGTTGCAGGGGA CGCGCTGAAGACGAACATCACCACGCTCGGCCCGCTTGTGCTCCCGCTGACCGAGCAGCTCATGTTCTTCTTCACGCTCGTCAGGCGGAAGGTGTTCAAG GCCCGCGTGAAGCCTTACATCCCGGATTTCAAGCTCGCGTTCGAACATTTCTGCATCCATGCAGGTGGGAGGGCGGTGCTCGACGAGTTGGAGAAGAACT TACAGCTGAGCGAGTGGCACATGGAGCCGTCGCGGATGACTCTGCACCGGTTCGGAAACACGTCGAGCAGCTCGTTGTGGTATGAGCTGGCTTACACGGA GGCAAAAGGCCGGGTTTCAGGCGGAGATCGGATATGGCAGATCGCATTCGGATCCGGGTTCAAGTGCAACAGTGCGGTTTGGAGAGCGTTGAGGCCGATA TCGAGTCAGGAGATGAAAGGGAACCCGTGGGTCAACTGTATTGATATGTACCCGGTCAAAGTTGCCTCTTGA
AA sequence Show only first row Show all	>Lus10030209 pacid=23152981 polypeptide=Lus10030209 locus=Lus10030209.g ID=Lus10030209.BGIv1.0 annot-version=v1.0 MDKESLTAEMAFKDSTFAVIKIRQRLPDFLKSVKLKYVRLGYGYTCNAATIILFTIFVPLLLTTVVQFVGLELDRFNQIWSIQTFQLQNIDEATTLAGSA ILLFLLGLYWARRSRAIYLMDFACYKPENERKISVDSFLEMSEESGSFVDETLNFQTRVAKRSGLGDETYLPRGITSRPPSLNMAEARAEAETVMFGALD ELFGKTGVKPKDIGILIVNCSLFNPTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISINLAQDLLKANPSTYAVILSTENITLNWYFGNDRSMLLCNC IFRMGGAAVLLSNKARDRSRSKYQLVHTVRTHKGADERSYNCVYQKEDENGTVGVSLARELMAVAGDALKTNITTLGPLVLPLTEQLMFFFTLVRRKVFK ARVKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKGRVSGGDRIWQIAFGSGFKCNSAVWRALRPI SSQEMKGNPWVNCIDMYPVKVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10030209 [exp]	0	1
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	3.0	0.9398
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	4.5	0.9186
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	6.3	0.9241
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	8.3	0.9187
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	10.0	0.9183
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	12.3	0.9089
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	13.4	0.9144
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	15.9	0.8916
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	17.7	0.9020
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	17.9	0.9053

Compare expression of checked genes

Lus10030209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.