Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00840 133 / 4e-39 DHHC-type zinc finger family protein (.1) AT3G60800 122 / 2e-34 DHHC-type zinc finger family protein (.1) AT4G22750 111 / 1e-30 DHHC-type zinc finger family protein (.1.2) AT4G22753 104 / 6e-27 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G09320 51 / 4e-08 DHHC-type zinc finger family protein (.1) AT4G24630 44 / 1e-05 DHHC-type zinc finger family protein (.1) AT5G50020 42 / 4e-05 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002694 [exp] 223 / 2e-73 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 123 / 6e-35 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 122 / 1e-34 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10009291 [exp] 99 / 8e-27 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 51 / 4e-08 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 50 / 1e-07 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 44 / 1e-05 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 39 / 0.001 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 0 / 1 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104000 [exp] 161 / 8e-50 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 134 / 3e-39 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 124 / 3e-35 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 121 / 4e-34 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 108 / 4e-29 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 49 / 1e-07 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 47 / 1e-06 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 43 / 3e-05 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030211 pacid=23153098 polypeptide=Lus10030211 locus=Lus10030211.g ID=Lus10030211.BGIv1.0 annot-version=v1.0 ATGGAGATTAACGCGTTCAAGTTCTGCTCCGGGCTAAGAGTCCTTGGCTACTTCATGATCGTCCTTGTAGCCGCGATAATCGGCATCTCGTATTACGCCG TGATAGTCGTTGTCTGGGGTCCTCAGCTGCTCCGCGGGGGCGCACGGTCGGCTCTGGCCTTGTTCTTAGTCGTCCCATTTCATTTTCTGCTTGCAATGCT GATATGGAGCTATTTTAGGGCTGTTATCCAAGACCCTGGCTCAGTGCCGGAGAATTGGAGAGCAGCATTGTCAGAGGAGAGTTTGGAAGCGTCGGATGCT AGGGTTTCTGAGAATTCCAGCTCTGGAGGAGGATCGGATAGGAGAGCTGGATATTGTAATCGTTGTCGGAACGGAAAGCCTCCTCGCTGCCATCATTGTT CTGTTTGTAAGTCACATTTGATCTCCTTATGA
AA sequence Show only first row Show all	>Lus10030211 pacid=23153098 polypeptide=Lus10030211 locus=Lus10030211.g ID=Lus10030211.BGIv1.0 annot-version=v1.0 MEINAFKFCSGLRVLGYFMIVLVAAIIGISYYAVIVVVWGPQLLRGGARSALALFLVVPFHFLLAMLIWSYFRAVIQDPGSVPENWRAALSEESLEASDA RVSENSSSGGGSDRRAGYCNRCRNGKPPRCHHCSVCKSHLISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00840			DHHC-type zinc finger family p...		Lus10030211 [exp]	0	1
AT3G12590			unknown protein		Lus10001698 [exp]	11.0	0.7559
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	19.0	0.6973
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	22.9	0.7041
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	24.5	0.7052
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	30.2	0.7191
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	34.2	0.7323
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10034894 [exp]	39.3	0.7174
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	40.8	0.7267
AT5G47020			unknown protein		Lus10007259 [exp]	83.7	0.6813
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	84.5	0.6876

Compare expression of checked genes

Lus10030211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.