Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00870 117 / 8e-30 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 117 / 2e-29 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 112 / 3e-27 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 100 / 3e-23 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 94 / 2e-21 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT4G09820 76 / 3e-15 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 73 / 3e-14 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G63650 71 / 2e-13 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 71 / 2e-13 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G01260 65 / 2e-11 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005999 [exp] 374 / 4e-128 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 115 / 3e-28 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 109 / 1e-26 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 110 / 2e-26 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 108 / 3e-26 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10032267 [exp] 81 / 9e-17 AT5G41315 487 / 2e-165 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024631 [exp] 81 / 1e-16 AT1G63650 470 / 3e-159 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10004575 [exp] 80 / 2e-16 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 63 / 1e-10 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176900 [exp] 227 / 1e-70 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 213 / 2e-65 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 157 / 2e-44 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 145 / 1e-39 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 118 / 2e-29 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 113 / 1e-27 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G054100 [exp] 89 / 2e-19 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 86 / 3e-18 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G083900 [exp] 67 / 3e-12 AT5G41315 464 / 5e-156 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 65 / 2e-11 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030212 pacid=23153066 polypeptide=Lus10030212 locus=Lus10030212.g ID=Lus10030212.BGIv1.0 annot-version=v1.0 ATGGATGAGCTCATAATCTCGCCGTCAACTTCCTCCTCCGTCCTAACCGCTCCTCCTCCGCCGCCTCCTACTCTCCAGCAACGTCTCCAGTTCCTCCTCC AGACCCAAATCCCAGACTGGTGGGCCTACGCCATCTTCTGGCAGACCTCCAACGATGCCGAGTCGGGTCGGGTCTTCCTCTCCTGGGCAGACGGCCATTT CCAAGGCTCCCCTGACTTCCCTCCGAAGCTCACCTCCTCCTCCCCCAACAATGACGTTTCCGCCCCCGGAAACGATGCCGTATCGGAGGCGGAGTGGTTC TACGTCATGTCACTGACCCGCTCCTTCTCCGCCGGGGACGGCGTCCCGGGCAAGGCTCTGACCACTGGCTCCCTAATGTGGCTGACCGGATCACACGAGC TCCAGTTCCACAACTGCGATCGGGCCAAGGAGTCCCAGCTCCACGGTGTCAGGACTTTAGTCTGCATCCCTGCCCACGGCGGGGTAGTAGAGCTCGCGTC ATGTGACGTCATCAAGGAGAACTGGGGGCTCGTCCAGCAGGTCCAGTCCCTGTTCGGGTCGGATTCATCTTCTTCTTCTTCGATCCCCAAAAATAACCCG CTTCCGTTTAACCTCGACATGAACATCTCGTTTGCCGACATCGGGATCATCGCCGGAATCCAAGAGGACGATTATGATGACGACAACCTTAATAACAATA TGGATAACAGCAACAATAATAAGTCGTCATTGTTGCTGCCACTGGACTCGGAGCATTATTCTGACTCGGATAGTCCGGTGAACAAAACGTCTCCGTTGAT GAAGAGGGTGCCGAAGAAGAGAGGGAGGAAGCCGAGGATGCCGGGGAAATCGGGGGAAGGGGGCCCCACTGAACCGCGTGGAGGCAGAGCGGCAGAGGCG GGAAAAGCTCAACCACAGATTCTACGCTCTACGCGCGGTGGTACCTAA
AA sequence Show only first row Show all	>Lus10030212 pacid=23153066 polypeptide=Lus10030212 locus=Lus10030212.g ID=Lus10030212.BGIv1.0 annot-version=v1.0 MDELIISPSTSSSVLTAPPPPPPTLQQRLQFLLQTQIPDWWAYAIFWQTSNDAESGRVFLSWADGHFQGSPDFPPKLTSSSPNNDVSAPGNDAVSEAEWF YVMSLTRSFSAGDGVPGKALTTGSLMWLTGSHELQFHNCDRAKESQLHGVRTLVCIPAHGGVVELASCDVIKENWGLVQQVQSLFGSDSSSSSSIPKNNP LPFNLDMNISFADIGIIAGIQEDDYDDDNLNNNMDNSNNNKSSLLLPLDSEHYSDSDSPVNKTSPLMKRVPKKRGRKPRMPGKSGEGGPTEPRGGRAAEA GKAQPQILRSTRGGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Lus10030212 [exp]	0	1
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	4.0	0.7402
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	10.9	0.7411
AT1G05675			UDP-Glycosyltransferase superf...		Lus10003809 [exp]	14.5	0.6793
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10024194 [exp]	16.6	0.6959
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	19.4	0.7356
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	22.4	0.7019
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	28.6	0.6779
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	30.5	0.6883
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	32.7	0.7076
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	33.9	0.7294

Compare expression of checked genes

Lus10030212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.