Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46710 397 / 7e-135 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 361 / 4e-121 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT5G22400 347 / 5e-115 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 342 / 2e-113 rac GTPase activating protein (.1) AT1G08340 323 / 1e-107 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005998 [exp] 709 / 0 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 355 / 3e-118 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 353 / 4e-118 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 352 / 1e-116 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 349 / 2e-115 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 271 / 3e-86 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 200 / 6e-59 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176800 [exp] 459 / 1e-158 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 409 / 6e-139 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 370 / 9e-124 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.009G162900 [exp] 360 / 8e-120 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 360 / 9e-120 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 355 / 7e-118 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 350 / 1e-115 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030213 pacid=23153150 polypeptide=Lus10030213 locus=Lus10030213.g ID=Lus10030213.BGIv1.0 annot-version=v1.0 ATGACTGACTTTACTACTTTCTGTTCTTGCAGCTCTCGCCTGATCCGATCAGATGACTCGCCTCTTCCGATCCAAATCCTGCGGCCTCGTTGGCGTTACA GAATTCGACTCGGCCCCTGCCGCTCCCACACCTTCCTTCCTCCCCCCCCCCCCCGCGGCGCCGGCCCCGGCGCCCGCCCCCGCCATGACGATGAGGAAGA CTACGACGACGACGAAGACTGCTCTCCGACCGCGATTTCCACTCCGTTTATCAGTCCCGCTTCCCGGTACAACAACGACGGAGGATTCGCCGGCCGGACG GATCGTTCCGGCAGCAGCAGTGGTGGAAATCAGTTCGCGATTCTGGATGTGGTGGTTACGGCTTTGAGAAGGTCCCTCATCTCGTGCAGCGTCGTGGAGA GAGAGGACGTCTCTTCATCCTCCGCCTCGCTGGATATTAGCTGGCCGACGGAGGTCAAGCACGTGTCGCACGTGACCTTCGACCGCTTCAATGGCTTCCT CGGCTTGCCCCGCGAGCTCGAGCCTGAGCTCCCCCGCAAAGTCCCCAGCGCCAGCGCCAATGTGTTTGGAGTATCTGCAGAATCAATGCAGTGCTCTTAC GACGACAGAGGCAACAGTGTACCGACGATTCTTCTGATGATGCAGAGGCGTTTGTATGTAGAAGGAGGCCTTAAGGCGGAAGGAATATTTCGAATCAATG CGGAGAACAGTCAAGAAGAGTATGTTCGCAGCCAGCTTAACAAAGGAGCTGTTCCTCGCACAATCGATTACCATTGTCTTGCTGGGTTGATTAAGGCATG GTTCAGAGAACTACCATCGGGAGTACTGGATTGCCTAACACCAGAACAAGTGATGCACTGCAACACAGAAGACGACTGCACCCACCTTGTGAAGATGCTT CCTCCCACCGAATCAGCATTGCTCGACTGGGCCATCAATCTGATGGCTGATGTCGTGGAGCATGAACAGTATAACAAAATGAACGCCCGGAATGTTGCTA TGGTCTTCGCACCAAACATGACCCAGATGGCTGACCCGTTGACTGCACTGATTCACGCCGTACAAGTGATGAACCTGCTCAAGACACTGATCACGAGAAC CATCCGCGAAAGATCTGCGAAAGCTGCTACCGAGCAATCCTCATCGTCACAACCTGATCCGCTCGATTCGGGTCTAACCAGTAACATATCGGGTTCCAAC AGTACTAGCGCCGAAGACGACCAAGGATCAGACTCGATCTCGGTCAGCAGCCCGACAATGTGCGAGATGCGAACGCTCGAAGAAGAAGATGGATGTAACG AAGTTTACGAGGAGAACGACCAGCAGCATCGGAGTTTAAGCAGAGGGATGGGAAGGCTGTGTAGACACCCGATATTCCAGTTCAACAAGCCGGTGACTTC GGGGTCGAAGAAGATGGGGGATGTTGGGTTTGTAAATAGCAGAGGAGGTGGTAGAGAAGCTGCTTGGGCTTGA
AA sequence Show only first row Show all	>Lus10030213 pacid=23153150 polypeptide=Lus10030213 locus=Lus10030213.g ID=Lus10030213.BGIv1.0 annot-version=v1.0 MTDFTTFCSCSSRLIRSDDSPLPIQILRPRWRYRIRLGPCRSHTFLPPPPPRGAGPGARPRHDDEEDYDDDEDCSPTAISTPFISPASRYNNDGGFAGRT DRSGSSSGGNQFAILDVVVTALRRSLISCSVVEREDVSSSSASLDISWPTEVKHVSHVTFDRFNGFLGLPRELEPELPRKVPSASANVFGVSAESMQCSY DDRGNSVPTILLMMQRRLYVEGGLKAEGIFRINAENSQEEYVRSQLNKGAVPRTIDYHCLAGLIKAWFRELPSGVLDCLTPEQVMHCNTEDDCTHLVKML PPTESALLDWAINLMADVVEHEQYNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNLLKTLITRTIRERSAKAATEQSSSSQPDPLDSGLTSNISGSN STSAEDDQGSDSISVSSPTMCEMRTLEEEDGCNEVYEENDQQHRSLSRGMGRLCRHPIFQFNKPVTSGSKKMGDVGFVNSRGGGREAAWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10042160 [exp]	1.0	0.8808
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	1.4	0.8576
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	4.9	0.7949
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	6.0	0.8059
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	7.0	0.8036
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	24.9	0.8370
AT5G50000			Protein kinase superfamily pro...		Lus10002368 [exp]	26.5	0.7345
AT1G57790			F-box family protein (.1)		Lus10024904 [exp]	29.7	0.8360
AT5G15880			unknown protein		Lus10034091 [exp]	37.8	0.7683
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	53.2	0.7982

Compare expression of checked genes

Lus10030213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.