Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46680 201 / 3e-64 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 184 / 8e-58 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT2G22430 123 / 2e-33 HD ATHB6 homeobox protein 6 (.1) AT5G65310 118 / 1e-31 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 117 / 2e-31 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT3G01470 115 / 5e-31 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 104 / 2e-26 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G15150 104 / 2e-26 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 101 / 2e-25 HD ATHB20 homeobox protein 20 (.1) AT1G27045 95 / 2e-23 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005997 [exp] 310 / 6e-107 AT2G46680 162 / 7e-49 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10032952 [exp] 149 / 2e-44 AT2G46680 142 / 1e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10008840 [exp] 148 / 8e-44 AT2G46680 140 / 5e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10023159 [exp] 122 / 5e-33 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10030800 [exp] 116 / 4e-31 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 115 / 7e-31 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 114 / 4e-30 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 112 / 1e-29 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 113 / 2e-29 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103000 [exp] 246 / 5e-82 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.002G176300 [exp] 239 / 2e-79 AT2G46680 219 / 1e-71 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.012G023700 [exp] 140 / 2e-40 AT2G46680 147 / 4e-43 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.001G083700 [exp] 130 / 3e-37 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.005G071900 [exp] 126 / 2e-34 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 126 / 2e-34 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.012G070900 [exp] 120 / 3e-32 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.015G065400 [exp] 119 / 5e-32 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 115 / 8e-31 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G161500 [exp] 114 / 3e-30 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10030214 pacid=23153003 polypeptide=Lus10030214 locus=Lus10030214.g ID=Lus10030214.BGIv1.0 annot-version=v1.0 ATGTTTGGCGAAGAAGAATATTACAGCAGTCCTCCAAATTCACCGGACAGGTACCAATCATCAAGCTCCACCACATCCACCACCACCACCACCACCAACC CAATTAGAAAGAAGAACAACAAAAACGGCAACAATTACAGCAAGCGGCGGTTCACCGACGAGCAGATCAAGTCCCTGGAGTCGATTTTCGAGTCCGAGAC TCGTCTCGAGCCTAGAAAGAAGGTCCAGCTGGCCAAGGAGCTCGGCCTGCAGCCGCGCCAGGTGGCCATATGGTTTCAGAACAAGCGGGCCAGGTGGAAG TCCAAGCAGCTCGAGCGTGACTACGGCATCCTCAGGGCTAATTACAATAGGTTGGCTTCCCGGTTCGAGTCGCTCAAGAAGGAGAAGCAAGCATTGGCCG CCCAGTTACAGAAGCTAAATGAGTTGATGACGGAGAACCCAAGAACAGAGGAAACGGGCCATGCAGAGACAACTTATAACAGCAGCGAAGGCGAATCCGA CAACGGTGTCAAGGACGAAAAGATTAGCCTCGAACTGAAAGCGCAATCGGAGCGAGAACGAGTCGGATTCATATATGAGGCTGAAAATGACAGCAGTATA AAGGTGGAGTATTTTGGAGCAGAGGAAGCCAAGTTGATGAGCATGGTTGGGGGTGACGGGTCGCTGACGTCACAGGAAGACTGGGGGAGTTTGGATTCAG ATGGAGTTCTGTTCCATGATCAATCCACCACTGACTATCAATGGTGGGAGTTTTGGACTTAA
AA sequence Show only first row Show all	>Lus10030214 pacid=23153003 polypeptide=Lus10030214 locus=Lus10030214.g ID=Lus10030214.BGIv1.0 annot-version=v1.0 MFGEEEYYSSPPNSPDRYQSSSSTTSTTTTTTNPIRKKNNKNGNNYSKRRFTDEQIKSLESIFESETRLEPRKKVQLAKELGLQPRQVAIWFQNKRARWK SKQLERDYGILRANYNRLASRFESLKKEKQALAAQLQKLNELMTENPRTEETGHAETTYNSSEGESDNGVKDEKISLELKAQSERERVGFIYEAENDSSI KVEYFGAEEAKLMSMVGGDGSLTSQEDWGSLDSDGVLFHDQSTTDYQWWEFWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	0	1
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	4.0	0.8515
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	4.2	0.8561
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	4.4	0.8592
AT5G54470	CO		B-box type zinc finger family ...		Lus10039727 [exp]	6.0	0.8243
AT1G74780			Nodulin-like / Major Facilitat...		Lus10036663 [exp]	9.2	0.8287
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	10.7	0.8521
AT1G47710			Serine protease inhibitor (SER...		Lus10002792 [exp]	10.8	0.8175
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10000928 [exp]	15.1	0.8403
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	16.1	0.8485
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	17.0	0.8311

Compare expression of checked genes

Lus10030214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.