Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22290 177 / 1e-50 Ubiquitin-specific protease family C19-related protein (.1) AT1G78880 168 / 3e-47 Ubiquitin-specific protease family C19-related protein (.1) AT1G16860 166 / 2e-46 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005996 [exp] 484 / 6e-172 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1) Lus10033374 [exp] 171 / 4e-48 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10034825 [exp] 171 / 3e-47 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10013906 [exp] 58 / 5e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176200 [exp] 278 / 2e-91 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006100 [exp] 176 / 5e-50 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252000 [exp] 174 / 2e-49 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.011G022600 [exp] 172 / 5e-49 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252500 [exp] 172 / 1e-48 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252400 [exp] 171 / 6e-48 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006000 [exp] 170 / 1e-47 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.004G002000 [exp] 166 / 1e-46 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030215 pacid=23153132 polypeptide=Lus10030215 locus=Lus10030215.g ID=Lus10030215.BGIv1.0 annot-version=v1.0 ATGAACGACGGTGACGAAGAAGCAACGCAAGATCAGAACCAAAACAACAACACGAAGAGCTTCTGCCTTCCAATTATCCCCACCATTTCCATATACATCA TCATCTTCCTCTTCTTCCTCGGCCTCTCCGTTTCCACCTTCATACTAGTCGTCGTTCACAGCCCCTTCTTTCTACTTGCATTACTTCTTCTCTCCGCTTT CGTCGCCTCTTTCCTTGGTTGGAACCGCCTCCATTATTCGCTTCGGAAAACCGCCGTTTGGAGCCTGCTTCTTCGTCGTTCTAAGTTCCCCCACTCCGAC GACCTCGCTTCCGCTTCCCACGACCAGCTCGTTAAGATCAGTGGGTTTGCATCTTGCAGCAATGTTTCCTTGGAATCATCTTATGAAAGAGCAACCAGGT GTATCTACACATCTACCCTTCTCTATGAATATGGAGGATTTGCTTCCTGTTTCCAGTGGAGTTTAACATTCTGTGAGAGATTCTCCACAGATTTCTACAT TACTGACCGGAAATCTGGCATTAGGGCTGTCATAAAAGCCGGAAATGGTTGTAAAGTCTTCCCCTTGATCGCTGACAACAAACTTGTGACTACTACTAGA AGTTGCAGAGCCCTATCCCCTTACCTCAGGAACTGGCTGCAAAGCAGAAACCTTTCGACCGAAATCCGCCTCCTACGTCTCAAAGAAGGGTATGTGCAAG AAGGCAGCTTGGTGAGTGTAGTAGGAACAGTTAAGAAGAGCATTAATGATGACCTAATGATGATAGTTCAGCCGCGAGATGTTTTGTCATCGGGTTGCTT GTGGTGCAAGTTTCTTCTTCCCGTGGAGGTTGATGGTTTGATACTTGCAGTAGTTCCTGAAGTGGATATTGCCTCTAGCTATCATGAACCAAGATTGCAG GAATCACCTGGTACTCTACCCTCCCTAGTTGCTAACCAGTCCTACAGAACAATAGGAAGGTCGTATTATGTTGTTTGGGATGTTTTTGATGCATTTCATG CGATTTACGACGTTTGGGGACAAGCAGGAACTAAGACGGACAATGAAGTTGCCCGGATCGAAGATTGGTTGGAATTTAAAAGAAACACGACGTGTCCCAT AAGAACACATTGTGTCCGATGCAACACGGTGTATCCCTCAAAGACACGGTCGTGTCCTTTTCTCTGGAAACTACATCCGAGAGCCTTTTTTGGGAGGAAC ACGCTCGTGTTCTTAAGGAACACGACGTGTCCTACCTTCAGACGGGCTTTCAAGTTATCTCCCTTCTCCGATTTGGAAGAGACGATATAA
AA sequence Show only first row Show all	>Lus10030215 pacid=23153132 polypeptide=Lus10030215 locus=Lus10030215.g ID=Lus10030215.BGIv1.0 annot-version=v1.0 MNDGDEEATQDQNQNNNTKSFCLPIIPTISIYIIIFLFFLGLSVSTFILVVVHSPFFLLALLLLSAFVASFLGWNRLHYSLRKTAVWSLLLRRSKFPHSD DLASASHDQLVKISGFASCSNVSLESSYERATRCIYTSTLLYEYGGFASCFQWSLTFCERFSTDFYITDRKSGIRAVIKAGNGCKVFPLIADNKLVTTTR SCRALSPYLRNWLQSRNLSTEIRLLRLKEGYVQEGSLVSVVGTVKKSINDDLMMIVQPRDVLSSGCLWCKFLLPVEVDGLILAVVPEVDIASSYHEPRLQ ESPGTLPSLVANQSYRTIGRSYYVVWDVFDAFHAIYDVWGQAGTKTDNEVARIEDWLEFKRNTTCPIRTHCVRCNTVYPSKTRSCPFLWKLHPRAFFGRN TLVFLRNTTCPTFRRAFKLSPFSDLEETI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78880			Ubiquitin-specific protease fa...		Lus10030215 [exp]	0	1
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10024902 [exp]	2.4	0.7131
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	12.4	0.7659
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	23.7	0.6928
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10011348 [exp]	27.8	0.6106
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	28.6	0.7027
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	49.3	0.6981
AT4G02210			unknown protein		Lus10010304 [exp]	58.8	0.5942
AT3G04560			unknown protein		Lus10042552 [exp]	61.3	0.6883
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10003347 [exp]	70.9	0.6253
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	72.6	0.6698

Compare expression of checked genes

Lus10030215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.