Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61880 647 / 0 CYP78A9 cytochrome p450 78a9 (.1.2) AT2G46660 639 / 0 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT1G01190 626 / 0 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT1G74110 479 / 5e-165 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT5G09970 459 / 4e-157 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT1G13710 450 / 4e-154 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT5G07990 248 / 7e-76 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G31940 246 / 9e-75 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 229 / 2e-68 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT1G01280 216 / 2e-63 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005995 [exp] 934 / 0 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 617 / 0 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10001670 [exp] 562 / 0 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10035844 [exp] 447 / 3e-152 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10036627 [exp] 442 / 1e-150 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 430 / 8e-146 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10015788 [exp] 404 / 5e-137 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10017742 [exp] 236 / 4e-71 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 233 / 6e-70 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102700 [exp] 700 / 0 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 695 / 0 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 661 / 0 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 656 / 0 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.005G084500 [exp] 472 / 3e-162 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 466 / 4e-160 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 465 / 1e-159 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 464 / 2e-159 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.001G054800 [exp] 431 / 5e-146 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 429 / 6e-146 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10030216 pacid=23153083 polypeptide=Lus10030216 locus=Lus10030216.g ID=Lus10030216.BGIv1.0 annot-version=v1.0 ATGAAAACCGAAATCGAAAGCCTCTGGTTATTTGCTCTGGCCTCCAAATGCAACATCATTGCATGGCCCATAACCTTAGCCGCCATAGCTCTCATCCTCC TCACCATCTCCCTCCTCCACTGGTTTCACCCCGGCGGCCCCGCTTGGGGGAAATACTACATCCGACGACCAACAACATCCTCTAAATCTCTCATCCCCGG GCCGAGAGGGCTCCCAGTAATCGGAAGCATGACCCTGATGGCCTCGCTGGCTCACCGTAGGATCGCTGCGGCAGCCCAAGCTTACAAGGCCAGGAGACTC ATGGCCTTCAGTTTGGGTGAGACTCGTGTGATAGTCACGTGCCACCCTGACGTGGCGAGGGAGATACTCAACGGGTCCGTCTTTGTCGACCGACCGGTTA AAGAGTCGGCTTACCAGTTAATGTTTGGTCGGGCCATTGGGTTCGCTCCTTACGGGGTTTACTGGCGAACCCTTCGTAGGATCGCAGCCGCTCACTTGTT CTCTCCAAAGCAGATCAAGGCTTCGGAGTCTCAGCGTCGGGCTATATCCGAGCAAATGGTGGAAGCTTTCATGATGATGGTCGGAAATGGTGGTCTGGTC ACGGTTCGTGGGGTGCTCAAGAAAGCTTCTTTAAACCACATGATGGGTTCGGTTTTCGGTCGGGAGTACGAGTTGGACGGTTCGAATTGCGAGGTTCAGG AGCTGAAGGAGTTGGTTGAACAAGGGTATGAACTTTTGGGTTTACTCAACTGGTCCGACCATCTTCCCTGGTTGGCCGATTTTGACTCGCAGAAAATCCG GTCCAGGTGTTCTGGTTTGGTCCCGAGAGTGAACCGGTTGGTTTCGGGTTTAATATCTGAGCATCGATCCCTTCCGTCTGAAGAAACCCGAGACTTCGTC GACGTTCTTCTCTCTCTCCAAGGCGCCGACAAATTGGCCGACTCCGACATGATCGCCGTTCTCTGGGAAATGATTTTCCGTGGAACTGATACGGTAGCGG TGCTGATCGAGTGGATCCTAGCTAGAATGGCACTCCATCTAGAATCACAATCGACGGTACACGATGAGCTGGACAGACACGTGGGCAGATCTAGAGCCGT CCAAGAATCTGACATCCAAAGCCTCCGGTACTTACAAGGGGTGGTGAAGGAAGTGTTGCGGCTACACCCGCCCGGCCCACTTCTGTCGTGGGCCAGGCTA GCAACCGTCGACACGACAATCGACGGACACAAAGTTCCGGCTGGAACAACTGCAATGGTTAACATGTGGGCCATTTCGCGTGATCCAGAGTTTTGGTCGG ACCCGTTGGAGTTCATGCCGGAGAGGTTTGTTGGTGGTGTAGATGCAATTGAAATGTCAGTGATGGGCTCGGACCTTAGGTTGGCTCCGTTCGGATCGGG CAGGCGGGCCTGCCCGGGGAAGAATTTGGGGATGGCAACTGTGTCGTTTTGGATCGCAACGATACTGCACGAGTTCGAAGTGAAGTCTGTGGCTGTGGGT GGTGGGGTTGACCTGTCCGAAGTGTTGAAGCTTTCTTGTGAGATGGCTACACCGTTAACCGTTAAACTGTGGCCCAGGCGTGTGGTGAATTGA
AA sequence Show only first row Show all	>Lus10030216 pacid=23153083 polypeptide=Lus10030216 locus=Lus10030216.g ID=Lus10030216.BGIv1.0 annot-version=v1.0 MKTEIESLWLFALASKCNIIAWPITLAAIALILLTISLLHWFHPGGPAWGKYYIRRPTTSSKSLIPGPRGLPVIGSMTLMASLAHRRIAAAAQAYKARRL MAFSLGETRVIVTCHPDVAREILNGSVFVDRPVKESAYQLMFGRAIGFAPYGVYWRTLRRIAAAHLFSPKQIKASESQRRAISEQMVEAFMMMVGNGGLV TVRGVLKKASLNHMMGSVFGREYELDGSNCEVQELKELVEQGYELLGLLNWSDHLPWLADFDSQKIRSRCSGLVPRVNRLVSGLISEHRSLPSEETRDFV DVLLSLQGADKLADSDMIAVLWEMIFRGTDTVAVLIEWILARMALHLESQSTVHDELDRHVGRSRAVQESDIQSLRYLQGVVKEVLRLHPPGPLLSWARL ATVDTTIDGHKVPAGTTAMVNMWAISRDPEFWSDPLEFMPERFVGGVDAIEMSVMGSDLRLAPFGSGRRACPGKNLGMATVSFWIATILHEFEVKSVAVG GGVDLSEVLKLSCEMATPLTVKLWPRRVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	0	1
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	3.5	0.9099
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	7.2	0.8681
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	9.0	0.9031
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	9.2	0.9068
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	10.0	0.8971
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	10.5	0.8691
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	11.8	0.8977
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	12.0	0.8380
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	13.0	0.8645
AT5G46530			AWPM-19-like family protein (....		Lus10011973 [exp]	17.7	0.8801

Compare expression of checked genes

Lus10030216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.