Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46630 86 / 3e-18 unknown protein AT1G63310 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005994 [exp] 474 / 2e-166 AT2G46630 / unknown protein Lus10012616 [exp] 75 / 6e-15 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1) Lus10001963 [exp] 50 / 3e-06 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102466 [exp] 115 / 4e-28 AT2G46630 114 / 1e-27 unknown protein Potri.002G175400 [exp] 112 / 6e-27 AT2G46630 107 / 3e-25 unknown protein Potri.002G034700 [exp] 52 / 7e-07 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) Potri.001G452900 [exp] 41 / 0.0004 AT1G63310 92 / 3e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030217 pacid=23152965 polypeptide=Lus10030217 locus=Lus10030217.g ID=Lus10030217.BGIv1.0 annot-version=v1.0 ATGGCCAACAACCAGCAACCCGCTCGCCCCTGGTTCCGGGTCGCTTCCCTTTCTCGCCCAGCCCCGCCCCAACCTCAATCCCCTGCGCCGCCGCCGCCGC CGCAGGAAGTCACTGTTGCTCCTTCGCAGCCTCGTCCGTTTCGAAACATCTCTCAGCCCAATCCGGTTACCCGCCCGGCTACTGATGGGCCCAGGCCCAG TCCATCAACTACCCCTGCAATGCAGCCCACACAACTGCCGCCGGCCACCCCTGTATTGCAGCCGACCCAACCGCCGCCGCGTTCTGCATCGGTTCCGCCG ACTCCAGTCGTCCGGACCACTGGCATTGCTGCTGCTTCTTCTTCAGCTTCAGTCCCCTCGTCGCCTACTAACCGAGTGATTTCCTCTGTTCCGTCTACGC CCCTCACTAAATCGGTGCCACCTCCTCCGCCGACTACTGTTTCATCCGTCCCTGCTTCTCCGATTCTGGCTCCGGCGGCAGGTCCAACTTCTTCCGTCGT GAATTCACCGGTTCGCAGTAACCCTGTTTCGGGCACAAAATCGGTTCCGAATTCTCCCCAATTCGCGGCGAGAAATTTGCCGGCGATAAGAACTGCTACG GCGGCGGTGGTTGAAACCCCACAACCTCTCTCGCCGAAGACAAAATCCACTGCTCCGCCGCCATCCCCGAGAGACGTGAAAACTCCACCACAGTCGCCGA AGATGAAGTCCATCGTCCGGCCGCCGTCTCCTCTGGTGCTGCCGCCGACTCAATTCAAACCGGAATTCAATTCCCCGCCGGAGGCAGAGCAGAAAACGGT TATGGTTCAGAACAAGGTTGAGAAGAATCACTCCACCACCCACAAACTCTGGTCCGTCGGGACCTCGGAAACCGGTAAGAATAATCCGTCAAAATCGGAC ACCAACAAGGGGACCAAGATCATCACGATTGCAGGGGAAAACAAGGGAGCGACGATGGAACTGTTCAGAACTCCACGGAAATCCACGTCGTCGCTATTTC CCGGGAAGCCCAATTACCTGAACGGGAATTCGGAGGCGAGCTCCGGTAGCAGCAGCGGGGAGGAAGATAGCGACGAGAAGAATCAGAGAGGCGGCGGAGA TGGAAGGAGGAAGAAACCGATGAGCGCAATCATGAACAGCAATGTGCAAGGGATTACCAATTCAATCATGTTCAACTCCACGTGTAGCCACCACGACCCG GGCGTTCACCTCGCACTGTCGAGGAAGCCGGTCGGCGGAGGAGGTGGAATGTCCGGCGGACGCCATAGCAATGGGTATCAAAGCTAG
AA sequence Show only first row Show all	>Lus10030217 pacid=23152965 polypeptide=Lus10030217 locus=Lus10030217.g ID=Lus10030217.BGIv1.0 annot-version=v1.0 MANNQQPARPWFRVASLSRPAPPQPQSPAPPPPPQEVTVAPSQPRPFRNISQPNPVTRPATDGPRPSPSTTPAMQPTQLPPATPVLQPTQPPPRSASVPP TPVVRTTGIAAASSSASVPSSPTNRVISSVPSTPLTKSVPPPPPTTVSSVPASPILAPAAGPTSSVVNSPVRSNPVSGTKSVPNSPQFAARNLPAIRTAT AAVVETPQPLSPKTKSTAPPPSPRDVKTPPQSPKMKSIVRPPSPLVLPPTQFKPEFNSPPEAEQKTVMVQNKVEKNHSTTHKLWSVGTSETGKNNPSKSD TNKGTKIITIAGENKGATMELFRTPRKSTSSLFPGKPNYLNGNSEASSGSSSGEEDSDEKNQRGGGDGRRKKPMSAIMNSNVQGITNSIMFNSTCSHHDP GVHLALSRKPVGGGGGMSGGRHSNGYQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46630			unknown protein		Lus10030217 [exp]	0	1
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	1.4	0.9614
AT2G46630			unknown protein		Lus10005994 [exp]	1.4	0.9610
AT3G20650			mRNA capping enzyme family pro...		Lus10010478 [exp]	3.0	0.9510
AT3G26350			unknown protein		Lus10006464 [exp]	4.5	0.9443
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	5.7	0.9492
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	6.3	0.9299
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	6.3	0.9305
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	6.5	0.9183
AT5G40382			Cytochrome c oxidase subunit V...		Lus10008765 [exp]	8.4	0.8941
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	8.5	0.9300

Compare expression of checked genes

Lus10030217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.